sorry I mistakenly deleted the R discussion from my inbox. Here is what I get back:<div><br></div><div><span class="Apple-style-span" style="border-collapse:separate;font-family:'DejaVu Sans Mono';font-size:13px;line-height:16px;white-space:pre-wrap;border-spacing:0px;background-color:rgb(225,226,229)"><pre tabindex="0" class="GDXA2EVBEAB" style="font-family:'DejaVu Sans Mono';font-size:10pt!important;outline:none;border-style:none;white-space:pre-wrap!important;margin-top:0px;margin-bottom:0px;line-height:1.25">
<span class="GDXA2EVBHAB ace_keyword" style="white-space:pre;color:blue">> </span><span class="GDXA2EVBL5 ace_keyword" style="color:blue">install.packages("rJava")
</span><span class="GDXA2EVBP5">Installing package(s) into ‘/home/richard/R/i686-redhat-linux-gnu-library/2.15’
(as ‘lib’ is unspecified)
</span><span class="GDXA2EVBP5">trying URL '<a href="http://cran.stat.sfu.ca/src/contrib/rJava_0.9-3.tar.gz">http://cran.stat.sfu.ca/src/contrib/rJava_0.9-3.tar.gz</a>'
</span><span class="GDXA2EVBP5">Content type 'application/x-gzip'</span><span class="GDXA2EVBP5"> length 537153 bytes (524 Kb)
</span><span class="GDXA2EVBP5">opened URL
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</span><span class="GDXA2EVBP5">downloaded 524 Kb
</span><span class="GDXA2EVBP5">* installing *source* package ‘rJava’ ...
</span><span class="GDXA2EVBP5">** package ‘rJava’ successfully unpacked and MD5 sums checked
</span>checking for gcc... gcc -m32 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -m32 -std=gnu99 accepts -g... yes
checking for gcc -m32 -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -m32 -std=gnu99 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
configure: checking whether gcc -m32 -std=gnu99 supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/bin/java'
archiver : '/bin/jar'
compiler : '/bin/javac'
header prep.: '/bin/javah'
cpp flags : '-I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.6/jre/../include -I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.6/jre/../include/linux'
java libs : '-L/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.6/jre/lib/i386 -L/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.6/jre/lib/i386/client -ljvm'
checking whether JNI programs can be compiled...
<span class="GDXA2EVBP5">configure: error: Cannot compile a simple JNI program. See config.log for details.
Make sure you have Java Development Kit installed and correctly registered in R.
If in doubt, re-run "R CMD javareconf" as root.
</span><span class="GDXA2EVBP5">ERROR: configuration failed for package ‘rJava’
</span><span class="GDXA2EVBP5">* removing ‘/home/richard/R/i686-redhat-linux-gnu-library/2.15/rJava’
</span><span class="GDXA2EVBP5">* restoring previous ‘/home/richard/R/i686-redhat-linux-gnu-library/2.15/rJava’
</span>Warning in install.packages :
installation of package ‘rJava’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmpz86WUb/downloaded_packages’
<span class="GDXA2EVBHAB ace_keyword" style="white-space:pre;color:blue">> </span><span class="GDXA2EVBL5 ace_keyword" style="color:blue">library(JGR)
</span><span class="GDXA2EVBP5">Loading required package: rJava
</span><span class="GDXA2EVBP5">Error : .onLoad failed in loadNamespace() for 'rJava', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/home/richard/R/i686-redhat-linux-gnu-library/2.15/rJava/libs/rJava.so':
libjvm.so: cannot open shared object file: No such file or directory
</span><span class="GDXA2EVBP5">Error: package ‘rJava’ could not be loaded</span></pre></span></div>