Fedora 16 Update: BEDTools-2.15.0-1.fc16
updates at fedoraproject.org
updates at fedoraproject.org
Tue Jan 17 20:28:22 UTC 2012
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Fedora Update Notification
FEDORA-2012-0107
2012-01-05 20:37:39
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Name : BEDTools
Product : Fedora 16
Version : 2.15.0
Release : 1.fc16
URL : http://code.google.com/p/bedtools/
Summary : A flexible suite of utilities for comparing genomic features
Description :
The BEDTools utilities allow one to address common genomics tasks such
as finding feature overlaps and computing coverage. The utilities are
largely based on four widely-used file formats: BED, GFF/GTF, VCF, and
SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that
answer complicated research questions by "streaming" several BEDTools
together.
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Update Information:
Update to upstream release 2.15.0 with new command-line interface
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ChangeLog:
* Wed Jan 4 2012 Adam Huffman <verdurin at fedoraproject.org> - 2.15.0-1
- update to new upstream release 2.15.0
- new unified command line interface 'bedtools'
- add python BR for new Makefile target to generate legacy commands
- remove 'overlap'
- add 'bedpeToBam', 'clusterBed', 'getOverlap', 'groupBy'
- add 'multiIntersectBed', 'windowMaker'
* Fri Oct 28 2011 Adam Huffman <bloch at verdurin.com> - 2.13.4-1
- new upstream minor bugfix release, see http://code.google.com/p/bedtools/
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This update can be installed with the "yum" update program. Use
su -c 'yum update BEDTools' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
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