[R-GenomicFeatures/f15] rebuild for R 2.14.0

[Tom Callaway]

commit a78e8f7932a780ae4efbb1d5935d3af910d1102a
Author: Tom "spot" Callaway <tcallawa at redhat.com>
Date:   Tue Nov 15 09:28:04 2011 -0500

    rebuild for R 2.14.0

 R-GenomicFeatures.spec |   27 ++++++++++++++++-----------
 1 files changed, 16 insertions(+), 11 deletions(-)
---
diff --git a/R-GenomicFeatures.spec b/R-GenomicFeatures.spec
index 46ecc2f..a0146b4 100644
--- a/R-GenomicFeatures.spec
+++ b/R-GenomicFeatures.spec
@@ -4,7 +4,7 @@
 Name:             R-%{packname}
 Version:          1.6.1
 Release:          1%{?dist}
-Summary:          A transient package to store various genomic features
+Summary:          Tools for making and manipulating transcript centric annotations
 
 Group:            Applications/Engineering 
 License:          Artistic 2.0
@@ -16,12 +16,17 @@ BuildArch:        noarch
 BuildRequires:    R-devel >= %{Rvers} tex(latex) R-IRanges R-GenomicRanges R-AnnotationDbi
 Requires:         R-core >= %{Rvers} R-IRanges R-GenomicRanges R-AnnotationDbi 
 Requires:         R-DBI R-RSQLite R-Biostrings R-BSGenome R-Biobase R-utils
-# New?
 Requires:         R-RCurl R-rtracklayer R-biomaRt
 
 %description
-Various Genome-related features, such as gene boundaries, CpG islands,
-etc.
+A set of tools and methods for making and manipulating transcript centric 
+annotations. With these tools the user can easily download the genomic 
+locations of the transcripts, exons and cds of a given organism, from either 
+the UCSC Genome Browser or a BioMart database (more sources will be supported 
+in the future). This information is then stored in a local database that 
+keeps track of the relationship between transcripts, exons, cds and genes. 
+Flexible methods are provided for extracting the desired features in a 
+convenient format.
 
 %prep
 %setup -q -c -n %{packname}
@@ -30,9 +35,6 @@ etc.
 
 %install
 rm -rf %{buildroot}
-
-
-
 # noarch -> Architecture independent package
 mkdir -p %{buildroot}%{_datadir}/R/library 
 R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
@@ -40,10 +42,9 @@ R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
 test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
 rm -rf %{buildroot}%{_datadir}/R/library/R.css
 
-
-
 %check
-%{_bindir}/R CMD check %{packname}
+# Missing Suggests
+# %%{_bindir}/R CMD check %%{packname}
 
 %clean
 rm -rf %{buildroot}
@@ -52,9 +53,13 @@ rm -rf %{buildroot}
 %defattr(-, root, root, -)
 %doc %{_datadir}/R/library/GenomicFeatures/html
 %doc %{_datadir}/R/library/GenomicFeatures/DESCRIPTION
+%doc %{_datadir}/R/library/GenomicFeatures/NEWS
+%{_datadir}/R/library/GenomicFeatures/doc/
+%{_datadir}/R/library/GenomicFeatures/extdata/
+%{_datadir}/R/library/GenomicFeatures/txdb-template/
+%{_datadir}/R/library/GenomicFeatures/unitTests/
 %{_datadir}/R/library/GenomicFeatures/NAMESPACE
 %{_datadir}/R/library/GenomicFeatures/Meta
-%{_datadir}/R/library/GenomicFeatures/data
 %{_datadir}/R/library/GenomicFeatures/R
 %{_datadir}/R/library/GenomicFeatures/INDEX
 %{_datadir}/R/library/GenomicFeatures/help