[R-GenomicFeatures] rebuild for R 2.14.0
Tom Callaway
spot at fedoraproject.org
Tue Nov 15 14:28:43 UTC 2011
commit 1cb82f7d69a2e4519e14511d0262379084315871
Author: Tom "spot" Callaway <tcallawa at redhat.com>
Date: Tue Nov 15 09:28:40 2011 -0500
rebuild for R 2.14.0
R-GenomicFeatures.spec | 27 ++++++++++++++++-----------
1 files changed, 16 insertions(+), 11 deletions(-)
---
diff --git a/R-GenomicFeatures.spec b/R-GenomicFeatures.spec
index 46ecc2f..a0146b4 100644
--- a/R-GenomicFeatures.spec
+++ b/R-GenomicFeatures.spec
@@ -4,7 +4,7 @@
Name: R-%{packname}
Version: 1.6.1
Release: 1%{?dist}
-Summary: A transient package to store various genomic features
+Summary: Tools for making and manipulating transcript centric annotations
Group: Applications/Engineering
License: Artistic 2.0
@@ -16,12 +16,17 @@ BuildArch: noarch
BuildRequires: R-devel >= %{Rvers} tex(latex) R-IRanges R-GenomicRanges R-AnnotationDbi
Requires: R-core >= %{Rvers} R-IRanges R-GenomicRanges R-AnnotationDbi
Requires: R-DBI R-RSQLite R-Biostrings R-BSGenome R-Biobase R-utils
-# New?
Requires: R-RCurl R-rtracklayer R-biomaRt
%description
-Various Genome-related features, such as gene boundaries, CpG islands,
-etc.
+A set of tools and methods for making and manipulating transcript centric
+annotations. With these tools the user can easily download the genomic
+locations of the transcripts, exons and cds of a given organism, from either
+the UCSC Genome Browser or a BioMart database (more sources will be supported
+in the future). This information is then stored in a local database that
+keeps track of the relationship between transcripts, exons, cds and genes.
+Flexible methods are provided for extracting the desired features in a
+convenient format.
%prep
%setup -q -c -n %{packname}
@@ -30,9 +35,6 @@ etc.
%install
rm -rf %{buildroot}
-
-
-
# noarch -> Architecture independent package
mkdir -p %{buildroot}%{_datadir}/R/library
R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
@@ -40,10 +42,9 @@ R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_datadir}/R/library/R.css
-
-
%check
-%{_bindir}/R CMD check %{packname}
+# Missing Suggests
+# %%{_bindir}/R CMD check %%{packname}
%clean
rm -rf %{buildroot}
@@ -52,9 +53,13 @@ rm -rf %{buildroot}
%defattr(-, root, root, -)
%doc %{_datadir}/R/library/GenomicFeatures/html
%doc %{_datadir}/R/library/GenomicFeatures/DESCRIPTION
+%doc %{_datadir}/R/library/GenomicFeatures/NEWS
+%{_datadir}/R/library/GenomicFeatures/doc/
+%{_datadir}/R/library/GenomicFeatures/extdata/
+%{_datadir}/R/library/GenomicFeatures/txdb-template/
+%{_datadir}/R/library/GenomicFeatures/unitTests/
%{_datadir}/R/library/GenomicFeatures/NAMESPACE
%{_datadir}/R/library/GenomicFeatures/Meta
-%{_datadir}/R/library/GenomicFeatures/data
%{_datadir}/R/library/GenomicFeatures/R
%{_datadir}/R/library/GenomicFeatures/INDEX
%{_datadir}/R/library/GenomicFeatures/help
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