[openmpi] update to 1.5.5, fix build with external hwloc, add initial support for building on ARM

Tue Apr 3 13:06:38 UTC 2012

commit e84526fa2a9b3fe47819ef028fea704b120a1a51
Author: Peter Robinson <pbrobinson at gmail.com>
Date:   Tue Apr 3 14:06:33 2012 +0100

    update to 1.5.5, fix build with external hwloc, add initial support for building on ARM

 .gitignore            |    1 +
 openmpi-removed.patch |   20 +++++++++-----------
 openmpi.spec          |   43 +++++++++++++++++++++----------------------
 sources               |    2 +-
 4 files changed, 32 insertions(+), 34 deletions(-)
---

diff --git a/.gitignore b/.gitignore
index c165f38..b7a66f9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,4 @@
 openmpi-1.4.1-RH.tar.bz2
 /openmpi-1.5-RH.tar.bz2
 /openmpi-1.5.4-clean.tar.bz2
+/openmpi-1.5.5-clean.tar.bz2
diff --git a/openmpi-removed.patch b/openmpi-removed.patch
index 093e439..229226d 100644
--- a/openmpi-removed.patch
+++ b/openmpi-removed.patch
@@ -1,7 +1,6 @@
-diff -up openmpi-1.5.4/configure.removed openmpi-1.5.4/configure
---- openmpi-1.5.4/configure.removed	2011-08-18 07:49:03.000000000 -0600
-+++ openmpi-1.5.4/configure	2011-11-17 15:13:57.461774628 -0700
-@@ -146215,10 +146215,6 @@ ac_config_files="$ac_config_files opal/m
+--- openmpi-1.5.5/configure.orig	2012-03-20 20:05:01.000000000 +0000
++++ openmpi-1.5.5/configure	2012-04-03 12:58:28.871397855 +0100
+@@ -150328,10 +150328,6 @@
  
  
  
@@ -12,18 +11,17 @@ diff -up openmpi-1.5.4/configure.removed openmpi-1.5.4/configure
  ac_config_files="$ac_config_files opal/mca/backtrace/execinfo/Makefile"
  
  
-@@ -169069,7 +169065,6 @@ do
-     "opal/mca/paffinity/hwloc/hwloc/include/Makefile") CONFIG_FILES="$CONFIG_FILES opal/mca/paffinity/hwloc/hwloc/include/Makefile" ;;
-     "opal/mca/paffinity/hwloc/hwloc/src/Makefile") CONFIG_FILES="$CONFIG_FILES opal/mca/paffinity/hwloc/hwloc/src/Makefile" ;;
+@@ -174422,7 +174418,6 @@
+     "opal/mca/hwloc/hwloc132/hwloc/src/Makefile") CONFIG_FILES="$CONFIG_FILES opal/mca/hwloc/hwloc132/hwloc/src/Makefile" ;;
+     "opal/mca/installdirs/config/install_dirs.h") CONFIG_FILES="$CONFIG_FILES opal/mca/installdirs/config/install_dirs.h" ;;
      "opal/mca/backtrace/Makefile") CONFIG_FILES="$CONFIG_FILES opal/mca/backtrace/Makefile" ;;
 -    "opal/mca/backtrace/darwin/Makefile") CONFIG_FILES="$CONFIG_FILES opal/mca/backtrace/darwin/Makefile" ;;
      "opal/mca/backtrace/execinfo/Makefile") CONFIG_FILES="$CONFIG_FILES opal/mca/backtrace/execinfo/Makefile" ;;
      "opal/mca/backtrace/none/Makefile") CONFIG_FILES="$CONFIG_FILES opal/mca/backtrace/none/Makefile" ;;
      "opal/mca/backtrace/printstack/Makefile") CONFIG_FILES="$CONFIG_FILES opal/mca/backtrace/printstack/Makefile" ;;
-diff -up openmpi-1.5.4/Makefile.in.removed openmpi-1.5.4/Makefile.in
---- openmpi-1.5.4/Makefile.in.removed	2011-08-18 07:46:01.000000000 -0600
-+++ openmpi-1.5.4/Makefile.in	2011-11-17 15:21:13.302181490 -0700
-@@ -197,7 +197,6 @@ am__aclocal_m4_deps = $(top_srcdir)/ompi
+--- openmpi-1.5.5/Makefile.in.orig	2012-04-03 12:58:21.937232790 +0100
++++ openmpi-1.5.5/Makefile.in	2012-04-03 12:58:28.874397927 +0100
+@@ -197,7 +197,6 @@
  	$(top_srcdir)/config/ext_no_configure_components.m4 \
  	$(top_srcdir)/config/mca_m4_config_include.m4 \
  	$(top_srcdir)/opal/mca/backtrace/configure.m4 \
diff --git a/openmpi.spec b/openmpi.spec
index b7dbb1c..e289f12 100644
--- a/openmpi.spec
+++ b/openmpi.spec
@@ -18,8 +18,8 @@
 #define _cc_name_suffix -gcc
 
 Name:			openmpi%{?_cc_name_suffix}
-Version:		1.5.4
-Release:		5%{?dist}.1
+Version:		1.5.5
+Release:		1%{?dist}
 Summary:		Open Message Passing Interface
 Group:			Development/Libraries
 License:		BSD, MIT and Romio
@@ -35,9 +35,14 @@ Source1:		openmpi.module.in
 Source2:		macros.openmpi
 # Patch to handle removed items
 Patch0:			openmpi-removed.patch
+Patch1:			configure_arm_fix.patch
 
-BuildRequires:		gcc-gfortran, libtool, numactl-devel
-#sparc 64 doesnt have valgrind
+BuildRequires:		gcc-gfortran, libtool
+# ARM HW doesn't support NUMA
+%ifnarch %{arm}
+BuildRequires:          numactl-devel
+%endif
+#sparc 64 doesn't have valgrind
 %ifnarch %{sparc}
 BuildRequires:          valgrind-devel
 %endif
@@ -46,18 +51,13 @@ BuildRequires:		librdmacm librdmacm-devel libibcm libibcm-devel
 BuildRequires:		hwloc-devel
 BuildRequires:		python libtool-ltdl-devel
 BuildRequires:		libesmtp-devel
-#%ifnarch ppc
-#BuildRequires:		compat-dapl-devel
-#%endif
+
 Provides:		mpi
 Requires:		environment-modules
-# Requires: openmpi-common = %{version}-%{release}
-Obsoletes:		openmpi-libs
 
 # s390 is unlikely to have the hardware we want, and some of the -devel
 # packages we require aren't available there.
-# ARM has issues with a lack of "atomic primitives" so we'll exclude it as well for the moment
-ExcludeArch: s390 s390x %{arm}
+ExcludeArch: s390 s390x
 
 # Private openmpi libraries
 %define __provides_exclude_from %{_libdir}/openmpi/lib/(lib(mca|o|v)|openmpi/).*.so
@@ -72,14 +72,6 @@ compliant implementation, Open MPI offers advantages for system and
 software vendors, application developers, and computer science
 researchers. For more information, see http://www.open-mpi.org/ .
 
-#%package	common
-#Summary:	Common files for openmpi
-#Group:		Development/Libraries
-#BuildArch:	noarch
-
-#%description common
-#contains files that are common across installations of op
-
 %package devel
 Summary:        Development files for openmpi
 Group:          Development/Libraries
@@ -104,6 +96,7 @@ Contains development headers and libraries for openmpi
 # in default arch packages (aka, the x86_64 package).  There are, however,
 # some arches that don't support forcing *any* mode, those we just leave
 # undefined.
+
 %ifarch %{ix86} ppc sparcv9
 %define mode 32
 %define modeflag -m32
@@ -130,7 +123,10 @@ rm -r opal/libltdl
 %ifarch x86_64
 XFLAGS="-fPIC"
 %endif
-./configure --prefix=%{_libdir}/%{name} --with-libnuma=/usr \
+./configure --prefix=%{_libdir}/%{name} \
+%ifnarch %{arm}
+	--with-libnuma=/usr \
+%endif
 	--with-openib=/usr \
 	--mandir=%{_mandir}/%{namearch} \
 	--includedir=%{_includedir}/%{namearch} \
@@ -141,8 +137,8 @@ XFLAGS="-fPIC"
 	--enable-memchecker \
 %endif
 	--with-esmtp \
-	--with-hwloc=external \
-	--with-libltdl=external \
+	--with-hwloc=/usr \
+	--with-libltdl=/usr \
 	--with-wrapper-cflags="%{?opt_cflags} %{?modeflag}" \
 	--with-wrapper-cxxflags="%{?opt_cxxflags} %{?modeflag}" \
 	--with-wrapper-fflags="%{?opt_fflags} %{?modeflag}" \
@@ -236,6 +232,9 @@ mkdir -p %{buildroot}/%{python_sitearch}/openmpi%{?_cc_name_suffix}
 %{_sysconfdir}/rpm/macros.%{namearch}
 
 %changelog
+* Tue Apr  3 2012 Peter Robinson <pbrobinson at fedoraproject.org> - 1.5.5-1
+- Update to 1.5.5
+
 * Tue Feb 28 2012 Fedora Release Engineering <rel-eng at lists.fedoraproject.org> - 1.5.4-5.1
 - Rebuilt for c++ ABI breakage
 
diff --git a/sources b/sources
index 8f5b4e7..bb3fb08 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-9a6c16e0b4235f00eefad17cb6b489b1  openmpi-1.5.4-clean.tar.bz2
+74a04e4f140299eee7f4db5e318b6c53  openmpi-1.5.5-clean.tar.bz2
