[BEDTools] Add new commands
verdurin
verdurin at fedoraproject.org
Wed Jan 4 17:14:26 UTC 2012
commit ac03d58384dffa781c5f8b247c36676cbeffbb96
Author: Adam Huffman <bloch at verdurin.com>
Date: Wed Jan 4 17:14:20 2012 +0000
Add new commands
BEDTools.spec | 8 ++++++++
1 files changed, 8 insertions(+), 0 deletions(-)
---
diff --git a/BEDTools.spec b/BEDTools.spec
index a448e4f..20f9884 100644
--- a/BEDTools.spec
+++ b/BEDTools.spec
@@ -76,10 +76,12 @@ rm -rf %{buildroot}
%{_bindir}/annotateBed
%{_bindir}/bamToBed
%{_bindir}/bed12ToBed6
+%{_bindir}/bedpeToBam
%{_bindir}/bedToBam
%{_bindir}/bedToIgv
%{_bindir}/bedtools
%{_bindir}/closestBed
+%{_bindir}/clusterBed
%{_bindir}/complementBed
%{_bindir}/coverageBed
#%{_bindir}/cuffToTrans
@@ -87,11 +89,14 @@ rm -rf %{buildroot}
#%{_bindir}/fjoin
%{_bindir}/flankBed
%{_bindir}/genomeCoverageBed
+%{_bindir}/getOverlap
+%{_bindir}/groupBy
%{_bindir}/intersectBed
%{_bindir}/linksBed
%{_bindir}/maskFastaFromBed
%{_bindir}/mergeBed
%{_bindir}/multiBamCov
+%{_bindir}/multiIntersectBed
%{_bindir}/nucBed
%{_bindir}/pairToBed
%{_bindir}/pairToPair
@@ -102,6 +107,7 @@ rm -rf %{buildroot}
%{_bindir}/tagBam
%{_bindir}/unionBedGraphs
%{_bindir}/windowBed
+%{_bindir}/windowMaker
%{_datadir}/%{name}/genomes
%{_datadir}/%{name}/data
@@ -116,6 +122,8 @@ rm -rf %{buildroot}
- new unified command line interface 'bedtools'
- add python BR for new Makefile target to generate legacy commands
- remove 'overlap'
+- add 'bedpeToBam', 'clusterBed', 'getOverlap', 'groupBy'
+- add 'multiIntersectBed', 'windowMaker'
* Fri Oct 28 2011 Adam Huffman <bloch at verdurin.com> - 2.13.4-1
- new upstream minor bugfix release, see http://code.google.com/p/bedtools/
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