[R-rtracklayer] get this building again

[Tom Callaway]

commit c10330c408682db488143fc0d095dd6cb152dc42
Author: Tom Callaway <spot at fedoraproject.org>
Date:   Mon Apr 8 17:00:57 2013 -0400

    get this building again

 .gitignore                             |    1 +
 R-rtracklayer-1.18.2-no-zlibbioc.patch |   23 +++++++++++++++++++++++
 R-rtracklayer.spec                     |   24 +++++++++++++++---------
 sources                                |    2 +-
 4 files changed, 40 insertions(+), 10 deletions(-)
---
diff --git a/.gitignore b/.gitignore
index 143292b..10e142f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1 +1,2 @@
 /rtracklayer_1.14.1.tar.gz
+/rtracklayer_1.18.2.tar.gz
diff --git a/R-rtracklayer-1.18.2-no-zlibbioc.patch b/R-rtracklayer-1.18.2-no-zlibbioc.patch
new file mode 100644
index 0000000..8e1af00
--- /dev/null
+++ b/R-rtracklayer-1.18.2-no-zlibbioc.patch
@@ -0,0 +1,23 @@
+diff -up rtracklayer/DESCRIPTION.zlibbioc rtracklayer/DESCRIPTION
+--- rtracklayer/DESCRIPTION.zlibbioc	2013-02-22 14:45:44.598260665 +0100
++++ rtracklayer/DESCRIPTION	2013-02-22 14:45:56.917260850 +0100
+@@ -5,7 +5,7 @@ Author: Michael Lawrence, Vince Carey, R
+ Depends: R (>= 2.10), methods, GenomicRanges (>= 1.9.6)
+ Imports: XML (>= 1.98-0), BiocGenerics (>= 0.1.0), IRanges (>=
+         1.15.37), GenomicRanges, Biostrings (>= 2.25.6), BSgenome (>=
+-        1.23.1), zlibbioc, RCurl (>= 1.4-2), Rsamtools (>= 1.7.3)
++        1.23.1), RCurl (>= 1.4-2), Rsamtools (>= 1.7.3)
+ Suggests: humanStemCell, microRNA (>= 1.1.1), genefilter, limma,
+         org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
+         TxDb.Hsapiens.UCSC.hg19.knownGene, hgu133plus2.db
+diff -up rtracklayer/NAMESPACE.zlibbioc rtracklayer/NAMESPACE
+--- rtracklayer/NAMESPACE.zlibbioc	2013-02-22 14:46:17.804261163 +0100
++++ rtracklayer/NAMESPACE	2013-02-22 14:46:21.474261218 +0100
+@@ -1,7 +1,5 @@
+ useDynLib(rtracklayer, .registration = TRUE)
+ 
+-import(zlibbioc)
+-
+ importFrom("stats", offset)
+ 
+ importFrom("XML", getNodeSet, xmlValue, xmlAttrs, htmlTreeParse,
diff --git a/R-rtracklayer.spec b/R-rtracklayer.spec
index f922864..6f27149 100644
--- a/R-rtracklayer.spec
+++ b/R-rtracklayer.spec
@@ -1,21 +1,21 @@
 %global packname  rtracklayer
 
 Name:             R-%{packname}
-Version:          1.14.1
-Release:          5%{?dist}
+Version:          1.18.2
+Release:          1%{?dist}
 Summary:          R interface to genome browsers and their annotation tracks
 Group:            Applications/Productivity
 License:          Artistic 2.0 and BSD
 URL:              http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html
 Source0:          http://www.bioconductor.org/packages/2.9/bioc/src/contrib/%{packname}_%{version}.tar.gz
 Source1:          rtracklayer_jimkent_license.txt
-Patch0:           R-rtracklayer-1.14.1-no-zlibbioc.patch
-Requires:         R-core >= 2.7.0, texlive-latex, R-methods, R-RCurl >= 1.4.2, R-XML >= 1.98.0 
-Requires:         R-IRanges >= 1.11.34, R-GenomicRanges >= 1.5.42, R-Biostrings >= 2.21.12 
-Requires:         R-BSgenome >= 1.15.17
-BuildRequires:    R-devel >= 2.7.0, R-methods, R-RCurl >= 1.4.2, R-XML >= 1.98.0
-BuildRequires:    R-IRanges-devel >= 1.11.34, R-GenomicRanges >= 1.5.42, R-Biostrings-devel >= 2.21.12
-BuildRequires:    R-BSgenome >= 1.15.17, zlib-devel
+Patch0:           R-rtracklayer-1.18.2-no-zlibbioc.patch
+Requires:         R-core >= 2.10.0, texlive-latex, R-methods, R-RCurl >= 1.4.2, R-XML >= 1.98.0 
+Requires:         R-IRanges >= 1.11.34, R-GenomicRanges >= 1.9.6, R-Biostrings >= 2.21.12 
+Requires:         R-BSgenome >= 1.15.17, R-Rsamtools >= 1.7.3
+BuildRequires:    R-devel >= 2.10.0, R-methods, R-RCurl >= 1.4.2, R-XML >= 1.98.0
+BuildRequires:    R-IRanges-devel >= 1.11.34, R-GenomicRanges >= 1.9.6, R-Biostrings-devel >= 2.21.12
+BuildRequires:    R-BSgenome >= 1.15.17, R-Rsamtools-devel >= 1.7.3, zlib-devel
 
 %description
 Extensible framework for interacting with multiple genome browsers (currently 
@@ -50,7 +50,9 @@ rm -rf %{buildroot}%{_libdir}/R/library/%{packname}/tests/quickload/T_species_Oc
 %files
 %dir %{_libdir}/R/library/%{packname}
 %doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/CITATION
 %doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
 %doc %{_libdir}/R/library/%{packname}/doc/
 %doc rtracklayer_jimkent_license.txt
 %{_libdir}/R/library/%{packname}/INDEX
@@ -64,8 +66,12 @@ rm -rf %{buildroot}%{_libdir}/R/library/%{packname}/tests/quickload/T_species_Oc
 %{_libdir}/R/library/%{packname}/notes/
 %{_libdir}/R/library/%{packname}/scripts/
 %{_libdir}/R/library/%{packname}/tests/
+%{_libdir}/R/library/%{packname}/unitTests/
 
 %changelog
+* Fri Feb 22 2013 Tom Callaway <spot at fedoraproject.org> - 1.18.2-1
+- update to 1.18.2
+
 * Wed Feb 13 2013 Fedora Release Engineering <rel-eng at lists.fedoraproject.org> - 1.14.1-5
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
 
diff --git a/sources b/sources
index 45a315f..bcda77f 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-130af70245801e131b0ebbda8fd83fde  rtracklayer_1.14.1.tar.gz
+fc691eb429941ca2cd4fa41e2260ba03  rtracklayer_1.18.2.tar.gz