Architecture specific change in rpms/R-rtracklayer.git

The package rpms/R-rtracklayer.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/R-rtracklayer.git/commit/?id=7f32634....

Change:
+ExcludeArch:      i686

Thanks.

Full change:
============

commit 7f32634a308008b9c74116f3b3ab8135d142547d
Author: Tom spot Callaway 
Date:   Mon Mar 31 10:01:08 2025 -0400

EA: i686 due to curl issues

diff --git a/R-rtracklayer.spec b/R-rtracklayer.spec
index 2cb2be0..3c54a88 100644
--- a/R-rtracklayer.spec
+++ b/R-rtracklayer.spec
@@ -21,6 +21,9 @@ BuildRequires:    R-GenomeInfoDb >= 1.15.2, R-GenomicAlignments >= 1.15.6, R-too
 BuildRequires:    openssl-devel, libcurl-devel
 BuildRequires:    R-BiocIO, R-restfulr >= 0.0.13

+# curl issues?
+ExcludeArch:      i686
+
 %description
 Extensible framework for interacting with multiple genome browsers (currently
 UCSC built-in) and manipulating annotation tracks in various formats

commit eca43ebc0d7b4da37140749f5c6bcc7773492f79
Author: Tom spot Callaway 
Date:   Sat Mar 29 14:35:00 2025 -0400

BR: libcurl-devel

diff --git a/R-rtracklayer.spec b/R-rtracklayer.spec
index 8eb7fa5..2cb2be0 100644
--- a/R-rtracklayer.spec
+++ b/R-rtracklayer.spec
@@ -18,7 +18,7 @@ BuildRequires:    R-IRanges-devel >= 2.13.13, R-GenomicRanges >= 1.37.2, R-Biost
 BuildRequires:    R-Rsamtools-devel >= 1.31.2, zlib-devel
 BuildRequires:    R-XVector-devel >= 0.19.7, R-BiocGenerics >= 0.35.3, R-S4Vectors-devel >= 0.23.18
 BuildRequires:    R-GenomeInfoDb >= 1.15.2, R-GenomicAlignments >= 1.15.6, R-tools, R-curl, R-httr
-BuildRequires:    openssl-devel
+BuildRequires:    openssl-devel, libcurl-devel
 BuildRequires:    R-BiocIO, R-restfulr >= 0.0.13

%description

commit 16412ad1ca12a819fc85d723771e161b5ee22aee
Author: Tom spot Callaway 
Date:   Sat Mar 29 12:27:23 2025 -0400

1.66.0

diff --git a/.gitignore b/.gitignore
index 88c80db..4f90e89 100644
--- a/.gitignore
+++ b/.gitignore
@@ -14,3 +14,4 @@
 /rtracklayer_1.52.0.tar.gz
 /rtracklayer_1.56.1.tar.gz
 /rtracklayer_1.62.0.tar.gz
+/rtracklayer_1.66.0.tar.gz
diff --git a/0001-fix-format-security.patch b/0001-fix-format-security.patch
deleted file mode 100644
index dcadaf7..0000000
--- a/0001-fix-format-security.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-From 916e93101564e0324a3feaa818a9d2fc2cedbff3 Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?I=C3=B1aki=20=C3=9Acar?= 
-Date: Fri, 26 Apr 2024 19:20:04 +0200
-Subject: [PATCH] fix format security
-
----
- src/handlers.c | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/src/handlers.c b/src/handlers.c
-index 233d9fe..645fde4 100644
---- a/src/handlers.c
-+++ b/src/handlers.c
-@@ -7,7 +7,7 @@
- static void R_warnHandler(char *format, va_list args) {
-   char warn_buf[WARN_BUF_SIZE];
-   vsnprintf(warn_buf, WARN_BUF_SIZE, format, args);
--  warning(warn_buf);
-+  warning("%s", warn_buf);
- }
- 
- static void R_abortHandler() {
--- 
-2.44.0
-
diff --git a/R-rtracklayer-1.66.0-c23.patch b/R-rtracklayer-1.66.0-c23.patch
new file mode 100644
index 0000000..db9f434
--- /dev/null
+++ b/R-rtracklayer-1.66.0-c23.patch
@@ -0,0 +1,24 @@
+diff -up ./src/ucsc/common.c.c23 ./src/ucsc/common.c
+--- ./src/ucsc/common.c.c23	2025-03-29 12:22:45.811240986 -0400
++++ ./src/ucsc/common.c	2025-03-29 12:23:35.583640959 -0400
+@@ -230,7 +230,7 @@ if (count > 1)
+     }
+ }
+ 
+-void slUniqify(void *pList, int (*compare )(const void *elem1,  const void *elem2), void (*free)())
++void slUniqify(void *pList, int (*compare )(const void *elem1,  const void *elem2), void (*free)(struct slList *))
+ /* Return sorted list with duplicates removed.
+  * Compare should be same type of function as slSort's compare (taking
+  * pointers to pointers to elements.  Free should take a simple
+diff -up ./src/ucsc/common.h.c23 ./src/ucsc/common.h
+--- ./src/ucsc/common.h.c23	2025-03-29 12:24:14.351625583 -0400
++++ ./src/ucsc/common.h	2025-03-29 12:24:24.071344564 -0400
+@@ -382,7 +382,7 @@ void slSort(void *pList, CmpFunction *co
+  * The arguments to the compare function in real, non-void, life
+  * are pointers to pointers. */
+ 
+-void slUniqify(void *pList, CmpFunction *compare, void (*free)());
++void slUniqify(void *pList, CmpFunction *compare, void (*free)(struct slList *));
+ /* Return sorted list with duplicates removed.
+  * Compare should be same type of function as slSort's compare (taking
+  * pointers to pointers to elements.  Free should take a simple
diff --git a/R-rtracklayer.spec b/R-rtracklayer.spec
index c780487..8eb7fa5 100644
--- a/R-rtracklayer.spec
+++ b/R-rtracklayer.spec
@@ -3,21 +3,21 @@
 %global __suggests_exclude ^R\((BSgenome\.Hsapiens\.UCSC\.hg19|GenomicFeatures|TxDb\.Hsapiens\.UCSC\.hg19\.knownGene|genefilter|hgu133plus2\.db|humanStemCell|limma|microRNA|org\.Hs\.eg\.db)\)

Name:             R-%{packname}
-Version:          1.62.0
-Release:          4%{dist}
+Version:          1.66.0
+Release:          1%{dist}
 Summary:          R interface to genome browsers and their annotation tracks
 # Automatically converted from old format: Artistic 2.0 and BSD - review is highly recommended.
 License:          Artistic-2.0 AND LicenseRef-Callaway-BSD
 URL:              http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html
 Source0:          http://www.bioconductor.org/packages/release/bioc/src/contrib/%%7Bpackname%7...
 Source1:          rtracklayer_jimkent_license.txt
-Patch0:           0001-fix-format-security.patch
+Patch0:           R-rtracklayer-1.66.0-c23.patch
 Requires:         texlive-latex
 BuildRequires:    R-devel >= 3.3.0, R-methods, R-RCurl >= 1.4.2, R-XML >= 1.98.0
 BuildRequires:    R-IRanges-devel >= 2.13.13, R-GenomicRanges >= 1.37.2, R-Biostrings-devel >= 2.47.6
 BuildRequires:    R-Rsamtools-devel >= 1.31.2, zlib-devel
 BuildRequires:    R-XVector-devel >= 0.19.7, R-BiocGenerics >= 0.35.3, R-S4Vectors-devel >= 0.23.18
-BuildRequires:    R-GenomeInfoDb >= 1.15.2, R-GenomicAlignments >= 1.15.6, R-tools
+BuildRequires:    R-GenomeInfoDb >= 1.15.2, R-GenomicAlignments >= 1.15.6, R-tools, R-curl, R-httr
 BuildRequires:    openssl-devel
 BuildRequires:    R-BiocIO, R-restfulr >= 0.0.13

@@ -33,9 +33,10 @@ modify the browser state, such as the current viewport.
 sed -i -e 's|zlibbioc,||' rtracklayer/DESCRIPTION
 sed -i -e 's|import(zlibbioc)||' rtracklayer/NAMESPACE
 pushd %{packname}
-%patch -P0 -p1
+%patch -P0 -p1 -b .c23
 popd

+
 # This email confirms that we have permission to use the Jim Kent
 # copyrighted files under the BSD license.
 cp %{SOURCE1} .
@@ -80,6 +81,9 @@ rm -rf %{buildroot}%{_libdir}/R/library/%{packname}/tests/quickload/T_species_Oc
 %{_libdir}/R/library/%{packname}/unitTests/

%changelog
+* Sat Mar 29 2025 Tom Callaway  - 1.66.0-1
+- update to 1.66.0
+
 * Thu Jan 16 2025 Fedora Release Engineering  - 1.62.0-4
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild

diff --git a/sources b/sources
index e98101c..341df41 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (rtracklayer_1.62.0.tar.gz) = fb025326a81c2e2647e4fb5c9c4743147741282255d07e6457144cc9ed77fd2084829d958d51e94231f62947c4f3cf90f567b9c10cd08765a5b7bdebececf520
+SHA512 (rtracklayer_1.66.0.tar.gz) = e1fc7fff5584598a4317d41d38abd87ff009e9efda57f8ea0ef8108bd9b8f914009badf3330501843fb3da47bff0960b1d802e7167fce9914a264785fa6d3249