November 2017 - epel-package-announce

Fedora EPEL 6 Update: percolator-3.01.02-1.el6

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-81d89b08e7 2017-11-03 14:25:42.827312 -------------------------------------------------------------------------------- Name : percolator Product : Fedora EPEL 6 Version : 3.01.02 Release : 1.el6 URL : https://github.com/percolator/percolator Summary : Software for postprocessing of shotgun proteomics data Description : The first step in analyzing an mass spectrometry assay is to match the harvested spectra against a target database using database search engines such as Sequest and Mascot, a process that renders list of peptide-spectrum matches. However, it is not trivial to assess the accuracy of these identifications. Percolator uses a semi-supervised machine learning to discriminate correct from incorrect peptide-spectrum matches, and calculates accurate statistics such as q-value (FDR) and posterior error probabilities. -------------------------------------------------------------------------------- Update Information: - Update to 3.01.02 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update percolator' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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Fedora EPEL 7 Update: meta-test-family-0.7.4-3.el7

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-7421f7d69d 2017-11-01 17:25:31.161275 -------------------------------------------------------------------------------- Name : meta-test-family Product : Fedora EPEL 7 Version : 0.7.4 Release : 3.el7 URL : https://github.com/fedora-modularity/meta-test-family Summary : Tool to test components of a modular Fedora Description : Tool to test components of a modular Fedora. -------------------------------------------------------------------------------- Update Information: Fix EPEL dependencies ---- Replacement with modularity-testing-framework -------------------------------------------------------------------------------- References: [ 1 ] Bug #1477154 - Re-Review Request: meta-test-family - a tool to test components of a modular Fedora https://bugzilla.redhat.com/show_bug.cgi?id=1477154 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update meta-test-family' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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Fedora EPEL 7 Update: tio-1.25-1.el7

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-35ec1c0f1c 2017-11-01 17:25:31.161218 -------------------------------------------------------------------------------- Name : tio Product : Fedora EPEL 7 Version : 1.25 Release : 1.el7 URL : https://tio.github.io/ Summary : Simple TTY terminal I/O application Description : Tio is a simple TTY terminal application which features a straightforward commandline interface to easily connect to TTY devices for basic input/output. -------------------------------------------------------------------------------- Update Information: tio v1.25 ========= * Fix error applying new stdout settings On Fedora 26 tio will quit with the following error message: "Error: Could not apply new stdout settings (Invalid argument)" In case of Fedora, it turns out that the new stdout settings used are a bit too agressive because an empty termios structure is used. To remedy this we reuse the existing stdout settings and only reconfigure the specific options we need to make a "raw" stdout configuration. * Remove unused pkgconfig in configure * Code cleanup Remove unused variable. -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update tio' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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Fedora EPEL 7 Update: yamllint-1.9.0-1.el7

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-0b22be685a 2017-11-01 17:25:31.161168 -------------------------------------------------------------------------------- Name : yamllint Product : Fedora EPEL 7 Version : 1.9.0 Release : 1.el7 URL : https://github.com/adrienverge/yamllint Summary : A linter for YAML files Description : A linter for YAML files. yamllint does not only check for syntax validity, but for weirdnesses like key repetition and cosmetic problems such as lines length, trailing spaces, indentation, etc. -------------------------------------------------------------------------------- Update Information: Update to latest upstream version -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update yamllint' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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Fedora EPEL 7 Update: gpaste-3.22.4-2.el7

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-cfc55bc900 2017-11-01 17:25:31.160979 -------------------------------------------------------------------------------- Name : gpaste Product : Fedora EPEL 7 Version : 3.22.4 Release : 2.el7 URL : https://github.com/Keruspe/GPaste Summary : Clipboard management system Description : GPaste is a clipboard management system. This package provides the D-Bus service and the command-line client. -------------------------------------------------------------------------------- Update Information: This update provides the latest maintained version of GPaste. It provides, amongst several bug fixes, enhanced support for GNOME 3.22, as provided by RHEL 7.4. -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update gpaste' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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[SECURITY] Fedora EPEL 6 Update: cacti-1.1.19-2.el6

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-93a3dd5663 2017-11-01 15:18:27.372576 -------------------------------------------------------------------------------- Name : cacti Product : Fedora EPEL 6 Version : 1.1.19 Release : 2.el6 URL : http://www.cacti.net/ Summary : An rrd based graphing tool Description : Cacti is a complete frontend to RRDTool. It stores all of the necessary information to create graphs and populate them with data in a MySQL database. The frontend is completely PHP driven. -------------------------------------------------------------------------------- Update Information: - CVE-2017-15194 -------------------------------------------------------------------------------- References: [ 1 ] Bug #1500456 - CVE-2017-15194 cacti: XSS in the URI / refresh page in include/global_session.php https://bugzilla.redhat.com/show_bug.cgi?id=1500456 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update cacti' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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Fedora EPEL 6 Update: git-tools-2017.10-1.el6

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-3557f8ce68 2017-11-01 15:18:27.372545 -------------------------------------------------------------------------------- Name : git-tools Product : Fedora EPEL 6 Version : 2017.10 Release : 1.el6 URL : https://github.com/MestreLion/git-tools Summary : Assorted git-related scripts and tools Description : Assorted git-related scripts and tools: git-branches-rename: Batch renames branches with a matching prefix to another prefix git-clone-subset: Clones a subset of a git repository git-find-uncommitted-repos: Recursively list repos with uncommitted changes git-rebase-theirs: Resolve rebase conflicts and failed cherry-picks by favoring 'theirs' version git-restore-mtime: Restore original modification time of files based on the date of the most recent commit that modified them git-strip-merge: A git-merge wrapper that deletes files on a "foreign" branch before merging -------------------------------------------------------------------------------- Update Information: New upstream release 2017.10 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update git-tools' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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Fedora EPEL 6 Update: wildmagic5-5.17-1.el6

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-663ef8c75e 2017-11-01 15:18:27.372516 -------------------------------------------------------------------------------- Name : wildmagic5 Product : Fedora EPEL 6 Version : 5.17 Release : 1.el6 URL : http://www.geometrictools.com Summary : Wild Magic libraries Description : A library of source code for computing in the fields of graphics, mathematics, physics, and image analysis. Web page documentation: geometrictools.com/Documentation/Documentation.html -------------------------------------------------------------------------------- Update Information: - Update to 5.17 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update wildmagic5' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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Fedora EPEL 6 Update: python-blessed-1.14.1-4.el6

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-0a86651fba 2017-11-01 15:18:27.372488 -------------------------------------------------------------------------------- Name : python-blessed Product : Fedora EPEL 6 Version : 1.14.1 Release : 4.el6 URL : https://pypi.python.org/pypi/blessed Summary : A thin, practical wrapper around terminal capabilities in Python Description : Blessed is a thin, practical wrapper around terminal styling, screen positioning, and keyboard input. It provides: - Styles, color, and maybe a little positioning without necessarily clearing the whole screen first. - Works great with standard Python string formatting. - Provides up-to-the-moment terminal height and width, so you can responds to terminal size changes. - Avoids making a mess if the output gets piped to a non-terminal: outputs to any file-like object such as StringIO, files, or pipes. - Uses the terminfo(5) database so it works with any terminal type and supports any terminal capability: No more C-like calls to tigetstr and tparm. - Keeps a minimum of internal state, so you can feel free to mix and match with calls to curses or whatever other terminal libraries you like. - Provides plenty of context managers to safely express terminal modes, automatically restoring the terminal to a safe state on exit. - Act intelligently when somebody redirects your output to a file, omitting all of the terminal sequences such as styling, colors, or positioning. - Dead-simple keyboard handling: safely decoding unicode input in your system��s preferred locale and supports application/arrow keys. - Allows the printable length of strings containing sequences to be determined. -------------------------------------------------------------------------------- Update Information: Conflicting ordereddict requirements in EL6 ---- Add EL6 build support -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update python-blessed' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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Fedora EPEL 6 Update: nordugrid-arc-doc-2.0.18-1.el6

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-3ffa61c5b0 2017-11-01 15:18:27.372451 -------------------------------------------------------------------------------- Name : nordugrid-arc-doc Product : Fedora EPEL 6 Version : 2.0.18 Release : 1.el6 URL : http://www.nordugrid.org/ Summary : Advanced Resource Connector Documentation Description : The NorduGrid is a collaboration aiming at development, maintenance and support of the free Grid middleware, known as the Advanced Resource Connector (ARC). -------------------------------------------------------------------------------- Update Information: http://www.nordugrid.org/arc/releases/15.03u17/release_notes_15.03u17.html -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update nordugrid-arc-doc' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

6 years, 6 months

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epel-package-announce November 2017