Hi List,
One of my ipa server's database had issue and left many log entries like the following in messages and slapd errors log:
*Sep 16 08*:34:28 ipa0 ns-slapd: [16/Sep/2021:08:34:28.886632992 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:28.987593487 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:29.035181321 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
Restart ipa fixed the issue. I googled for root cause and found the verified solution - https://access.redhat.com/solutions/3098131, which is to increase nsslapd-dncachememsize to a reasonable value (>150MB). This sounds like easy, however, all slapd cache parameters are related. Red Hat Directory Server performance tuning guide explain a bit:
https://access.redhat.com/documentation/en-us/red_hat_directory_server/10/ht...
However, I wonder if there is a better guide.
Thanks.
Kathy.
On 9/16/21 5:20 PM, Kathy Zhu via FreeIPA-users wrote:
Hi List,
One of my ipa server's database had issue and left many log entries like the following in messages and slapd errors log:
*Sep 16 08*:34:28 ipa0 ns-slapd: [16/Sep/2021:08:34:28.886632992 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:28.987593487 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:29.035181321 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
Is there anything else in the error log around these messages? This is kind of a generic error, and increasing the DN cache is not a guarantee it will resolve this.
Restart ipa fixed the issue. I googled for root cause and found the verified solution - https://access.redhat.com/solutions/3098131 https://access.redhat.com/solutions/3098131, which is to increase nsslapd-dncachememsize to a reasonable value (>150MB). This sounds like easy, however, all slapd cache parameters are related. Red Hat Directory Server performance tuning guide explain a bit:
https://access.redhat.com/documentation/en-us/red_hat_directory_server/10/ht... https://access.redhat.com/documentation/en-us/red_hat_directory_server/10/html/performance_tuning_guide/memoryusage
However, I wonder if there is a better guide.
Not really :-) There is a RHDS 11 version, but I think the performance tuning part is the same as RHDS 10.
Mark
Thanks.
Kathy.
FreeIPA-users mailing list -- freeipa-users@lists.fedorahosted.org To unsubscribe send an email to freeipa-users-leave@lists.fedorahosted.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedorahosted.org/archives/list/freeipa-users@lists.fedorahoste... Do not reply to spam on the list, report it: https://pagure.io/fedora-infrastructure
Thanks, Mark, for your reply.
The following repeats in /var/log/dirsrv/slapd-EXAMPLE-COM/errors: ...
[16/Sep/2021:08:34:27.880349688 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:27.980810867 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:27.981036823 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.031642976 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.031856673 -0700] - ERR - trickle_threadmain - Serious Error---Failed to trickle, err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.081390783 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.081634618 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.181946001 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.182160603 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.282366716 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.282650113 -0700] - ERR - trickle_threadmain - Serious Error---Failed to trickle, err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.283083329 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery ...
Thanks!
Kathy.
On Thu, Sep 16, 2021 at 2:38 PM Mark Reynolds mreynolds@redhat.com wrote:
On 9/16/21 5:20 PM, Kathy Zhu via FreeIPA-users wrote:
Hi List,
One of my ipa server's database had issue and left many log entries like the following in messages and slapd errors log:
*Sep 16 08*:34:28 ipa0 ns-slapd: [16/Sep/2021:08:34:28.886632992 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:28.987593487 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:29.035181321 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
Is there anything else in the error log around these messages? This is kind of a generic error, and increasing the DN cache is not a guarantee it will resolve this.
Restart ipa fixed the issue. I googled for root cause and found the verified solution - https://access.redhat.com/solutions/3098131, which is to increase nsslapd-dncachememsize to a reasonable value (>150MB). This sounds like easy, however, all slapd cache parameters are related. Red Hat Directory Server performance tuning guide explain a bit:
https://access.redhat.com/documentation/en-us/red_hat_directory_server/10/ht...
However, I wonder if there is a better guide.
Not really :-) There is a RHDS 11 version, but I think the performance tuning part is the same as RHDS 10.
Mark
Thanks.
Kathy.
FreeIPA-users mailing list -- freeipa-users@lists.fedorahosted.org To unsubscribe send an email to freeipa-users-leave@lists.fedorahosted.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedorahosted.org/archives/list/freeipa-users@lists.fedorahoste... Do not reply to spam on the list, report it: https://pagure.io/fedora-infrastructure
-- Directory Server Development Team
Hi Mark,
If it helps, this is the same ipa server which I posted in subject "ipa_check_consistency alerts and ERR - slapd_poll - Timed out" yesterday.
Thanks.
Kathy.
On Thu, Sep 16, 2021 at 2:57 PM Kathy Zhu wrote:
Thanks, Mark, for your reply.
The following repeats in /var/log/dirsrv/slapd-EXAMPLE-COM/errors: ...
[16/Sep/2021:08:34:27.880349688 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:27.980810867 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:27.981036823 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.031642976 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.031856673 -0700] - ERR - trickle_threadmain - Serious Error---Failed to trickle, err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.081390783 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.081634618 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.181946001 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.182160603 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.282366716 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.282650113 -0700] - ERR - trickle_threadmain - Serious Error---Failed to trickle, err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.283083329 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery ...
Thanks!
Kathy.
On Thu, Sep 16, 2021 at 2:38 PM Mark Reynolds mreynolds@redhat.com wrote:
On 9/16/21 5:20 PM, Kathy Zhu via FreeIPA-users wrote:
Hi List,
One of my ipa server's database had issue and left many log entries like the following in messages and slapd errors log:
*Sep 16 08*:34:28 ipa0 ns-slapd: [16/Sep/2021:08:34:28.886632992 -0700]
- ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:28.987593487 -0700]
- ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:29.035181321 -0700]
- ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
Is there anything else in the error log around these messages? This is kind of a generic error, and increasing the DN cache is not a guarantee it will resolve this.
Restart ipa fixed the issue. I googled for root cause and found the verified solution - https://access.redhat.com/solutions/3098131, which is to increase nsslapd-dncachememsize to a reasonable value (>150MB). This sounds like easy, however, all slapd cache parameters are related. Red Hat Directory Server performance tuning guide explain a bit:
https://access.redhat.com/documentation/en-us/red_hat_directory_server/10/ht...
However, I wonder if there is a better guide.
Not really :-) There is a RHDS 11 version, but I think the performance tuning part is the same as RHDS 10.
Mark
Thanks.
Kathy.
FreeIPA-users mailing list -- freeipa-users@lists.fedorahosted.org To unsubscribe send an email to freeipa-users-leave@lists.fedorahosted.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedorahosted.org/archives/list/freeipa-users@lists.fedorahoste... Do not reply to spam on the list, report it: https://pagure.io/fedora-infrastructure
-- Directory Server Development Team
On 9/17/21 12:26 AM, Kathy Zhu via FreeIPA-users wrote:
Hi Mark,
If it helps, this is the same ipa server which I posted in subject "ipa_check_consistency alerts and ERR - slapd_poll - Timed out" yesterday.
Hi Kathy,
The slapd_poll message is likely not related to the DB_PANIC. Slap_poll here means that the server was not able to send a result (ldap client not reading ?) for longer than ioblock-timeout.
The DB panic is a fatal error of the database that requires a restart of the server. The restart will trigger a DB recovery. It is difficult to know the RC of the DB panic. According to the initial message DB was running a deadlock resolution during DB panic, you may try to give priority to updates (setting nsslapd-db-deadlock-policy: 6) that can significantly reduces db deadlocks.
regards thierry
Thanks.
Kathy.
On Thu, Sep 16, 2021 at 2:57 PM Kathy Zhu wrote:
Thanks, Mark, for your reply. The following repeats in /var/log/dirsrv/slapd-EXAMPLE-COM/errors: ... [16/Sep/2021:08:34:27.880349688 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery) [16/Sep/2021:08:34:27.980810867 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery [16/Sep/2021:08:34:27.981036823 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery) [16/Sep/2021:08:34:28.031642976 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery [16/Sep/2021:08:34:28.031856673 -0700] - ERR - trickle_threadmain - Serious Error---Failed to trickle, err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery) [16/Sep/2021:08:34:28.081390783 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery [16/Sep/2021:08:34:28.081634618 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery) [16/Sep/2021:08:34:28.181946001 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery [16/Sep/2021:08:34:28.182160603 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery) [16/Sep/2021:08:34:28.282366716 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery [16/Sep/2021:08:34:28.282650113 -0700] - ERR - trickle_threadmain - Serious Error---Failed to trickle, err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery) [16/Sep/2021:08:34:28.283083329 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery ... Thanks! Kathy. On Thu, Sep 16, 2021 at 2:38 PM Mark Reynolds <mreynolds@redhat.com <mailto:mreynolds@redhat.com>> wrote: On 9/16/21 5:20 PM, Kathy Zhu via FreeIPA-users wrote:
Hi List, One of my ipa server's database had issue and left many log entries like the following in messages and slapd errors log: *Sep 16 08*:34:28 ipa0 ns-slapd: [16/Sep/2021:08:34:28.886632992 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery *Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:28.987593487 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery *Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:29.035181321 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
Is there anything else in the error log around these messages? This is kind of a generic error, and increasing the DN cache is not a guarantee it will resolve this.
Restart ipa fixed the issue. I googled for root cause and found the verified solution - https://access.redhat.com/solutions/3098131 <https://access.redhat.com/solutions/3098131>, which is to increase nsslapd-dncachememsize to a reasonable value (>150MB). This sounds like easy, however, all slapd cache parameters are related. Red Hat Directory Server performance tuning guide explain a bit: https://access.redhat.com/documentation/en-us/red_hat_directory_server/10/html/performance_tuning_guide/memoryusage <https://access.redhat.com/documentation/en-us/red_hat_directory_server/10/html/performance_tuning_guide/memoryusage> However, I wonder if there is a better guide.
Not really :-) There is a RHDS 11 version, but I think the performance tuning part is the same as RHDS 10. Mark
Thanks. Kathy. _______________________________________________ FreeIPA-users mailing list --freeipa-users@lists.fedorahosted.org <mailto:freeipa-users@lists.fedorahosted.org> To unsubscribe send an email tofreeipa-users-leave@lists.fedorahosted.org <mailto:freeipa-users-leave@lists.fedorahosted.org> Fedora Code of Conduct:https://docs.fedoraproject.org/en-US/project/code-of-conduct/ <https://docs.fedoraproject.org/en-US/project/code-of-conduct/> List Guidelines:https://fedoraproject.org/wiki/Mailing_list_guidelines <https://fedoraproject.org/wiki/Mailing_list_guidelines> List Archives:https://lists.fedorahosted.org/archives/list/freeipa-users@lists.fedorahosted.org <https://lists.fedorahosted.org/archives/list/freeipa-users@lists.fedorahosted.org> Do not reply to spam on the list, report it:https://pagure.io/fedora-infrastructure <https://pagure.io/fedora-infrastructure>
-- Directory Server Development Team
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Thank you, Thierry! Thank you to explain. That makes sense. I will set nsslapd-db-deadlock-policy to 6 instead (it is 9 now).
In this instance, I did notice that this ipa server's nsslapd-dncachememsize is 78MB, which is much less than 150MB. Shall I increase it? Or leave it as is?
Kathy.
On Fri, Sep 17, 2021 at 12:56 AM Thierry Bordaz tbordaz@redhat.com wrote:
On 9/17/21 12:26 AM, Kathy Zhu via FreeIPA-users wrote:
Hi Mark,
If it helps, this is the same ipa server which I posted in subject "ipa_check_consistency alerts and ERR - slapd_poll - Timed out" yesterday.
Hi Kathy,
The slapd_poll message is likely not related to the DB_PANIC. Slap_poll here means that the server was not able to send a result (ldap client not reading ?) for longer than ioblock-timeout.
The DB panic is a fatal error of the database that requires a restart of the server. The restart will trigger a DB recovery. It is difficult to know the RC of the DB panic. According to the initial message DB was running a deadlock resolution during DB panic, you may try to give priority to updates (setting nsslapd-db-deadlock-policy: 6) that can significantly reduces db deadlocks.
regards thierry
Thanks.
Kathy.
On Thu, Sep 16, 2021 at 2:57 PM Kathy Zhu wrote:
Thanks, Mark, for your reply.
The following repeats in /var/log/dirsrv/slapd-EXAMPLE-COM/errors: ...
[16/Sep/2021:08:34:27.880349688 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:27.980810867 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:27.981036823 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.031642976 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.031856673 -0700] - ERR - trickle_threadmain - Serious Error---Failed to trickle, err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.081390783 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.081634618 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.181946001 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.182160603 -0700] - CRIT - deadlock_threadmain - Serious Error---Failed in deadlock detect (aborted at 0x0), err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.282366716 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
[16/Sep/2021:08:34:28.282650113 -0700] - ERR - trickle_threadmain - Serious Error---Failed to trickle, err=-30973 (BDB0087 DB_RUNRECOVERY: Fatal error, run database recovery)
[16/Sep/2021:08:34:28.283083329 -0700] - ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery ...
Thanks!
Kathy.
On Thu, Sep 16, 2021 at 2:38 PM Mark Reynolds mreynolds@redhat.com wrote:
On 9/16/21 5:20 PM, Kathy Zhu via FreeIPA-users wrote:
Hi List,
One of my ipa server's database had issue and left many log entries like the following in messages and slapd errors log:
*Sep 16 08*:34:28 ipa0 ns-slapd: [16/Sep/2021:08:34:28.886632992 -0700]
- ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:28.987593487 -0700]
- ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
*Sep 16 08*:34:29 ipa0 ns-slapd: [16/Sep/2021:08:34:29.035181321 -0700]
- ERR - libdb - BDB0060 PANIC: fatal region error detected; run recovery
Is there anything else in the error log around these messages? This is kind of a generic error, and increasing the DN cache is not a guarantee it will resolve this.
Restart ipa fixed the issue. I googled for root cause and found the verified solution - https://access.redhat.com/solutions/3098131, which is to increase nsslapd-dncachememsize to a reasonable value (>150MB). This sounds like easy, however, all slapd cache parameters are related. Red Hat Directory Server performance tuning guide explain a bit:
https://access.redhat.com/documentation/en-us/red_hat_directory_server/10/ht...
However, I wonder if there is a better guide.
Not really :-) There is a RHDS 11 version, but I think the performance tuning part is the same as RHDS 10.
Mark
Thanks.
Kathy.
FreeIPA-users mailing list -- freeipa-users@lists.fedorahosted.org To unsubscribe send an email to freeipa-users-leave@lists.fedorahosted.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedorahosted.org/archives/list/freeipa-users@lists.fedorahoste... Do not reply to spam on the list, report it: https://pagure.io/fedora-infrastructure
-- Directory Server Development Team
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