Neurofedora October 2022

neurofedora@lists.fedoraproject.org

2 participants
3 discussions

Next Open NeuroFedora Meeting: 1300 UTC on Monday, 24 October (Today)
by Ankur Sinha 24 Oct '22

24 Oct '22

Hello everyone, Please join us at the next Open NeuroFedora team meeting on Monday 24th October(today!) at 1300UTC in #fedora-neuro on Matrix or IRC (Libera.chat). The meeting is a public meeting, and open for everyone to attend. You can join us over: Matrix: https://matrix.to/#/#neuro:fedoraproject.org IRC: https://webchat.libera.chat/?channels=#fedora-neuro You can use this link to see the local time for the meeting: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Open+NeuroFedora+… or you can use this command in a terminal: $ date --date='TZ="UTC" 1300 today' The meeting will be chaired by @ankursinha. The agenda for the meeting is: - New introductions and roll call. - Tasks from last meeting: https://meetbot.fedoraproject.org/fedora-neuro/2022-10-10/neurofedora.2022-… - Open Pagure tickets: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… - Package health check: https://packager-dashboard.fedoraproject.org/neuro-sig - Open package reviews check: https://bugzilla.redhat.com/show_bug.cgi?id=fedora-neuro - CompNeuro lab compose status check for F37/F38: https://koji.fedoraproject.org/koji/packageinfo?packageID=30691 - Neuroscience query of the week - Next meeting day, and chair. - Open floor. We hope to see you there! The meeting announcement is also posted on the NeuroFedora blog here: https://neuroblog.fedoraproject.org/2022/10/21/next-open-neurofedora-meetin… You can learn more about NeuroFedora here: https://neuro.fedoraproject.org -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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Next Open NeuroFedora Meeting: 1300 UTC on Monday, 10 October September (Today)
by Ankur Sinha 12 Oct '22

12 Oct '22

Hello everyone, Please join us at the next Open NeuroFedora team meeting on Monday 10th October(today!) at 1300UTC in #fedora-neuro on Matrix or IRC (Libera.chat). The meeting is a public meeting, and open for everyone to attend. You can join us over: Matrix: https://matrix.to/#/#neuro:fedoraproject.org IRC: https://webchat.libera.chat/?channels=#fedora-neuro You can use this link to see the local time for the meeting: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Open+NeuroFedora+… or you can use this command in a terminal: $ date --date='TZ="UTC" 1300 today' The meeting will be chaired by @ankursinha. The agenda for the meeting is: - New introductions and roll call. - Tasks from last meeting: https://meetbot.fedoraproject.org/fedora-neuro/2022-10-10/neurofedora.2022-… - Open Pagure tickets: https://pagure.io/neuro-sig/NeuroFedora/issues?status=Open&tags=S%3A+Next+m… - Package health check: https://packager-dashboard.fedoraproject.org/neuro-sig - Open package reviews check: https://bugzilla.redhat.com/show_bug.cgi?id=fedora-neuro - CompNeuro lab compose status check for F37/F38: https://koji.fedoraproject.org/koji/packageinfo?packageID=30691 - Neuroscience query of the week - Next meeting day, and chair. - Open floor. We hope to see you there! The meeting announcement is also posted on the NeuroFedora blog here: https://neuroblog.fedoraproject.org/2022/10/09/next-open-neurofedora-meetin… You can learn more about NeuroFedora here: https://neuro.fedoraproject.org -- Thanks, Regards, Ankur Sinha "FranciscoD" (He / Him / His) | https://fedoraproject.org/wiki/User:Ankursinha Time zone: Europe/London

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Re: Heads up: python-rdflib updated to 6.2.0 in f37 and rawhide
by Sandro 04 Oct '22

04 Oct '22

Following up on my previous mail, erroneously sent to the wrong list. I dug a little deeper and, well, it got dirtier. Please see below. On 29-09-2022 14:58, Sandro wrote: > Hi, > > I have been looking into the FTBFS of python-odml. > > TL;DR > Please update packages now python-rdflib has been updated to > 6.2.0 according to the preparations already provisioned in the spec files. > > > Package python-odml depends on python3-owl_rl for the tests. > > Package python-owl_rl pulls in python-rdflib-jsonld. This is a manual > hack in %prep: > > # Remove when rdflib is updated to 6.0.0+, which includes > # rdflib_jsonld > echo "rdflib_jsonld" >> requirements.txt Just above that part is a modification to requirements.txt: # works with rdflib 5.0.0+, so loosen requirement sed -i -e 's/rdflib.*/rdflib/' requirements.txt Presumably, because rdflib >= 6.0.1 [1] was not then available. Now it is and we are in for a dependency rollercoaster. Btw, the package builds fine [2] with the rdflib_jsonld requirement removed. > Package python-rdflib-jsonld contains the following: > > # v6.0.0 of rdflib provides rdflib-jsonld itself. > # This package would not be compatible with future > # releases of rdflib > Conflicts: python3-rdflib >= 6.0.0 This is valid and causes a conflict as it should, now that python-rdflib has been updated to 6.2.0 in rawhide and f37. > I pushed python-rdflib-jsonld to rawhide, hoping this would solve the > issue with python-odml being FTBFS. I also have an update for f37 > pending in testing. I can still pull the update for f37 before it lands > in stable, unless, of course there are packages which explicitly depend > on it. That would (need to) be a 'BuildRequires: python3-rdflib-jsonld < > 6.0'. I removed my build for f37 from Bodhi. The rawhide build landed. But all this shouldn't matter. Where it gets messy is python-odml itself. I tried building it in Copr with the updated python-rdflib-jsonld [3]. The tests blew up. Upstream has released version 1.5.2 and pinned rfdlib to 5.0.0 [4]. > Advice on how to handle python-rdflib-jsonld for f37 and rawhide is > welcome. I think it should be retired for these releases in favor of > python-rdflib. But I'm not sure on that. I guess the only sane way out of this is have upstream resolve the issues caused by rdflib >=6 and sit this one out. [1] https://github.com/RDFLib/OWL-RL/blob/master/requirements.txt [2] https://copr.fedorainfracloud.org/coprs/gui1ty/neuro-sig/build/4886094/ [3] https://copr.fedorainfracloud.org/coprs/gui1ty/neuro-sig/build/4886101/ [4] https://github.com/G-Node/python-odml/blob/v1.5.2/CHANGELOG.md#pinning-rdfl… -- Sandro -- FAS: gui1ty IRC: Penguinpee

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Neurofedora October 2022