package-announce November 2009

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Fedora 10 Update: R-qtl-1.14.2-2.fc10
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-12102 2009-11-25 13:35:56 -------------------------------------------------------------------------------- Name : R-qtl Product : Fedora 10 Version : 1.14.2 Release : 2.fc10 URL : http://www.rqtl.org/ Summary : Tools for analyzing QTL experiments Description : R-qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. Our goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. We have implemented the main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses. The current version of R-qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation and Haley-Knott regression. -------------------------------------------------------------------------------- Update Information: This release adapts R-qtl for R version 2.10 and higher. -------------------------------------------------------------------------------- ChangeLog: * Sun Nov 22 2009 Mattias Ellert <mattias.ellert(a)fysast.uu.se> - 1.14.2-2 - Modify build for R 2.10 and higher - remove scriptlets * Wed Oct 7 2009 Mattias Ellert <mattias.ellert(a)fysast.uu.se> - 1.14.2-1 - New upstream release - Disable the check since it trips on a missing suggested package - Change license tag to GPLv3 to reflect an upstream license change * Fri Jul 24 2009 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.11-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild -------------------------------------------------------------------------------- References: [ 1 ] Bug #539097 - FTBFS R-qtl-1.14.2-1.fc13 https://bugzilla.redhat.com/show_bug.cgi?id=539097 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-qtl' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 12 Update: avogadro-1.0.0-2.fc12
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-11918 2009-11-24 06:32:47 -------------------------------------------------------------------------------- Name : avogadro Product : Fedora 12 Version : 1.0.0 Release : 2.fc12 URL : http://avogadro.openmolecules.net/ Summary : An advanced molecular editor for chemical purposes Description : An advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas, which offers flexible rendering and a powerful plugin architecture. -------------------------------------------------------------------------------- ChangeLog: * Mon Nov 16 2009 Rex Dieter <rdieter(a)fedoraproject.org> - 1.0.0-2 - -libs: Requires: sip-api(%_sip_api_major) >= %_sip_api (#538124) - Requires: %{name}-libs ... -------------------------------------------------------------------------------- References: [ 1 ] Bug #538124 - avogadro needs rebuild for sip-4.9.x https://bugzilla.redhat.com/show_bug.cgi?id=538124 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update avogadro' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: kbibtex-0.2.2-17.fc11
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-12100 2009-11-25 13:35:54 -------------------------------------------------------------------------------- Name : kbibtex Product : Fedora 11 Version : 0.2.2 Release : 17.fc11 URL : http://www.unix-ag.uni-kl.de/~fischer/kbibtex/ Summary : A BibTeX editor for KDE Description : KBibTeX is a BibTeX editor for KDE -------------------------------------------------------------------------------- Update Information: Latest upstream release. -------------------------------------------------------------------------------- ChangeLog: * Mon Nov 23 2009 Christian Nolte <ch.nolte at noltec.org> - 0.2.2-17 - Updated to latest upstream version 0.2.2 -------------------------------------------------------------------------------- References: [ 1 ] Bug #517048 - Update kbibtex to latest upstream version 0.2.2 https://bugzilla.redhat.com/show_bug.cgi?id=517048 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update kbibtex' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 12 Update: cabal2spec-0.19-1.fc12
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-12097 2009-11-25 13:35:49 -------------------------------------------------------------------------------- Name : cabal2spec Product : Fedora 12 Version : 0.19 Release : 1.fc12 URL : https://fedorahosted.org/cabal2spec/ Summary : Tool for creating .spec files for Haskell Cabal Packages Description : This package provides specfile templates and a script cabal2spec for easy packaging of Haskell Cabal packages (hackages) for ghc following the Fedora Haskell Packaging Guidelines and associated RPM macros. -------------------------------------------------------------------------------- ChangeLog: * Tue Nov 24 2009 Jens Petersen <petersen(a)redhat.com> - 0.19-1 - cabal2spec-diff: reverse diff file order - devel: don't provide ghc-<package> - doc: description formatting - changelog: take Haskell SIG as initial packager -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update cabal2spec' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: moe-1.3-1.fc11
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-11831 2009-11-20 04:26:13 -------------------------------------------------------------------------------- Name : moe Product : Fedora 11 Version : 1.3 Release : 1.fc11 URL : http://www.gnu.org/software/moe/moe.html Summary : A powerful clean text editor Description : GNU Moe is a powerful, 8-bit clean, text editor for ISO-8859 and ASCII character encodings. It has a modeless, user-friendly interface, online help, multiple windows, unlimited undo/redo capability, unlimited line length, global search/replace (on all buffers at once), block operations, automatic indentation, word wrapping, filename completion, directory browser, duplicate removal from prompt histories, delimiter matching, etc. -------------------------------------------------------------------------------- Update Information: Updated to new upstream version -------------------------------------------------------------------------------- ChangeLog: * Tue Nov 17 2009 Vivek Shah <boni.vivek at gmail.com> -1.3-1 - Updated to new upstream version * Sat Jul 25 2009 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.0-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update moe' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: dracut-modules-olpc-0.2.8-1.fc11
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-11763 2009-11-20 04:24:02 -------------------------------------------------------------------------------- Name : dracut-modules-olpc Product : Fedora 11 Version : 0.2.8 Release : 1.fc11 URL : http://dev.laptop.org/git/users/dsd/dracut-modules-olpc Summary : OLPC modules for dracut initramfs Description : Dracut initramfs modules to implement OLPC-specific features, including antitheft, switching between OS updates, and the OLPC boot animation. -------------------------------------------------------------------------------- Update Information: Fix booting of unversioned filesystems, and fix a problem where every shutdown was unclean. -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update dracut-modules-olpc' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: gadmin-squid-0.1.2-0.1.fc11
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-12091 2009-11-25 13:35:34 -------------------------------------------------------------------------------- Name : gadmin-squid Product : Fedora 11 Version : 0.1.2 Release : 0.1.fc11 URL : http://mange.dynalias.org/linux.html Summary : A GTK+ administation tool for the Squid proxy server Description : A fast and easy to use GTK+ administration tool for the Squid proxy server. Most options found in squid and advanced ACL-building. Delay pools and logformats are discarded for now but are planned. Some options may not be compiled into your squid so you'll have to delete those in the configuration tab if you get any errors. -------------------------------------------------------------------------------- Update Information: Old package was not functional, this one should be. - Upgraded to new upstream version, also in response to bz #498156 - Updated package source URL (spec file change only) - Readded %GNUconfigure, now works as it should (spec file change only) - Makes automatic squid.conf backups for each new version. - Now using "squid -k kill" to deactivate the server. - All options are ok for Fedora 11, Debian and Ubuntu. - Removes ACL name 'all' as an ACL definition type. - Added unit descriptions to some options that now require them. - Removes unhandled extra options. - Removes more options that Debian/Ubuntu's Squid is not compiled with: incoming_icp_average, incoming_http_average, incoming_dns_average min_icp_poll_cnt, min_dns_poll_cnt, min_http_poll_cnt. -------------------------------------------------------------------------------- ChangeLog: * Sun Nov 22 2009 S.A. Hartsuiker <s.hartsuiker(a)ogd.nl> - 0.1.2-0.1 - Upgraded to new upstream version, also in response to bz #498156 - Updated package source URL (spec file change only) - Readded %GNUconfigure, now works as it should (spec file change only) - Makes automatic squid.conf backups for each new version. - Now using "squid -k kill" to deactivate the server. - All options are ok for Fedora 11, Debian and Ubuntu. - Removes ACL name 'all' as an ACL definition type. - Added unit descriptions to some options that now require them. - Removes unhandled extra options. - Removes more options that Debian/Ubuntu's Squid is not compiled with: incoming_icp_average, incoming_http_average, incoming_dns_average min_icp_poll_cnt, min_dns_poll_cnt, min_http_poll_cnt. * Fri Jul 24 2009 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 0.1.0-0.6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild -------------------------------------------------------------------------------- References: [ 1 ] Bug #498156 - gadmin-squid does not generate valid squid.conf https://bugzilla.redhat.com/show_bug.cgi?id=498156 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update gadmin-squid' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 12 Update: kde-plasma-smooth-tasks-0.0.1-0.1.wip20091116.fc12
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-12009 2009-11-24 06:37:32 -------------------------------------------------------------------------------- Name : kde-plasma-smooth-tasks Product : Fedora 12 Version : 0.0.1 Release : 0.1.wip20091116.fc12 URL : http://www.kde-look.org/content/show.php/Smooth+Tasks?content=101586 Summary : KDE taskbar replacement with window peeking ability Description : This taskbar replacement has window peeking similar to Windows 7 when you use the kwin 'highlite window' effect. Even if this effect is not used you can click the tooltip in order to activate the corresponding window. -------------------------------------------------------------------------------- Update Information: This taskbar replacement has window peeking similar to Windows 7 when you use the kwin 'highlite window' effect. Even if this effect is not used you can click the tooltip in order to activate the corresponding window. -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- References: [ 1 ] Bug #536796 - Review Request: kde-plasma-smooth-tasks - KDE taskbar replacement with window peeking ability https://bugzilla.redhat.com/show_bug.cgi?id=536796 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update kde-plasma-smooth-tasks' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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[SECURITY] Fedora 12 Update: php-pear-Net-Ping-2.4.5-1.fc12
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-11523 2009-11-16 06:28:15 -------------------------------------------------------------------------------- Name : php-pear-Net-Ping Product : Fedora 12 Version : 2.4.5 Release : 1.fc12 URL : http://pear.php.net/package/Net_Ping Summary : Execute ping Description : OS independent wrapper class for executing ping calls. -------------------------------------------------------------------------------- Update Information: Upstream Changelog Version 2.4.5 - QA Release: * Prevent command injection [saltybeagle] (CVE-2009-4024) -------------------------------------------------------------------------------- ChangeLog: * Sat Nov 14 2009 Remi Collet <Fedora(a)FamilleCollet.com> 2.4.5-1 - update to 2.4.5 (bugfix) - rename Net_Ping.xml to php-pear-Net-Ping.xml -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update php-pear-Net-Ping' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: autofs-5.0.4-46
by updates＠fedoraproject.org 25 Nov '09

25 Nov '09

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-12087 2009-11-25 13:35:28 -------------------------------------------------------------------------------- Name : autofs Product : Fedora 11 Version : 5.0.4 Release : 46 URL : http://wiki.autofs.net/ Summary : A tool for automatically mounting and unmounting filesystems Description : autofs is a daemon which automatically mounts filesystems when you use them, and unmounts them later when you are not using them. This can include network filesystems, CD-ROMs, floppies, and so forth. -------------------------------------------------------------------------------- ChangeLog: * Mon Nov 23 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-46 - fix timeout in connect_nb(). * Tue Nov 10 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-45 - correct bug referred to in changelog entry for rev 43. * Tue Nov 10 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-44 - fix typo in init script (bz516620). * Mon Nov 9 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-43 - fix ext4 "preen" fsck at mount (bz531616). * Fri Oct 16 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-42 - fix stale initialization for file map instance (bz510025). * Thu Sep 10 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-40 - special case cifs mount location escaping (bz522109). * Thu Sep 3 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-38 - fix libxml2 non-thread-safe calls. - fix direct map cache locking. - fix patch "dont umount existing direct mount on reread" deadlock. * Fri Jul 17 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-36 - fix typo in patch to allow dumping core. * Wed Jul 15 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-35 - fix an RPC fd leak. - don't block signals we expect to dump core. - fix pthread push order in expire_proc_direct(). * Mon Jun 22 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-33 - update fix map type info parse error. * Fri Jun 12 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-31 - add support for LDAP_URI="ldap:///<domain db>" SRV RR lookup. - fix incorrect dclist free. - srv lookup handle endianness. - fix bug introduced by library reload changes which causes autofs to not release mount thread resources when using submounts. - fix notify mount message path. - try harder to work out if we created mount point at remount. - fix double free in do_sasl_bind(). - manual umount recovery fixes. - fix map type info parse error. * Mon May 18 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-29 - use intr option as hosts mount default. - sync kernel includes with upstream kernel. - dont umount existing direct mount on master re-read. - fix incorrect shutdown introduced by library relaod fixes. - improve manual umount recovery. - always read file maps multi map fix. - always read file maps key lookup fixes. * Wed May 6 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-27 - dont fail on ipv6 address adding host. * Thu Apr 16 2009 Ian Kent <ikent(a)redhat.com> - 1:5.0.4-25 - fix lsb init script header. - fix memory leak reading ldap master map. - fix st_remove_tasks() locking. - reset flex scanner when setting buffer. - zero s_magic is valid. -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update autofs' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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package-announce November 2009