July 2009 - package-announce - Fedora Mailing-Lists

Fedora 11 Update: R-BSgenome-1.12.2-1.fc11

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6673 2009-06-18 11:05:37 -------------------------------------------------------------------------------- Name : R-BSgenome Product : Fedora 11 Version : 1.12.2 Release : 1.fc11 URL : http://bioconductor.org/packages/2.4/bioc/html/BSgenome.html Summary : Infrastructure for Biostrings-based genome data packages Description : Infrastructure shared by all the Biostrings-based genome data packages -------------------------------------------------------------------------------- Update Information: Update to the lastest releases from Bioconductor Infrastructure for Biostrings- based genome data packages -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- References: [ 1 ] Bug #490722 - Review Request: R-BSgenome - Infrastructure for Biostrings-based genome data packages https://bugzilla.redhat.com/show_bug.cgi?id=490722 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-BSgenome' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: R-IRanges-1.2.3-1.fc11

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6673 2009-06-18 11:05:37 -------------------------------------------------------------------------------- Name : R-IRanges Product : Fedora 11 Version : 1.2.3 Release : 1.fc11 URL : http://bioconductor.org/packages/2.4/bioc/html/IRanges.html Summary : Low-level containers for storing sets of integer ranges Description : The IRanges class and its extensions are low-level containers for storing sets of integer ranges. A typical use of these containers in biology is for representing a set of chromosome regions. More specific extensions of the IRanges class will typically allow the storage of additional information attached to each chromosome region as well as a hierarchical relationship between these regions. -------------------------------------------------------------------------------- Update Information: Update to the lastest releases from Bioconductor Infrastructure for Biostrings- based genome data packages -------------------------------------------------------------------------------- ChangeLog: * Fri Jun 12 2009 pingou <pingou(a)pingoured.fr> 1.2.3-1 - Update to 1.2.3 * Wed Apr 29 2009 pingou <pingou(a)pingoured.fr> 1.2.0-2 - Update the file section to package doc - Update the Requires and BR to take into account R version * Tue Apr 28 2009 pingou <pingou(a)pingoured.fr> 1.2.0-1 - Update to Bioconductor 2.4 and R-2.9.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #490722 - Review Request: R-BSgenome - Infrastructure for Biostrings-based genome data packages https://bugzilla.redhat.com/show_bug.cgi?id=490722 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-IRanges' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: R-Biobase-2.4.1-1.fc11

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6673 2009-06-18 11:05:37 -------------------------------------------------------------------------------- Name : R-Biobase Product : Fedora 11 Version : 2.4.1 Release : 1.fc11 URL : http://bioconductor.org/packages/2.4/bioc/html/Biobase.html Summary : Base functions for Bioconductor Description : Base functions for Bioconductor (bioconductor.org). Biobase provides functions that are needed by many other Bioconductor packages or which replace R functions. -------------------------------------------------------------------------------- Update Information: Update to the lastest releases from Bioconductor Infrastructure for Biostrings- based genome data packages -------------------------------------------------------------------------------- ChangeLog: * Fri Jun 12 2009 pingou <pingou(a)pingoured.fr> 2.4.1-1 - Update to 2.4.1 - Remove bad french translation * Tue Apr 28 2009 pingou <pingou(a)pingoured.fr> 2.4.0-1 - Update to Bioconductor 2.4 and R-2.9.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #490722 - Review Request: R-BSgenome - Infrastructure for Biostrings-based genome data packages https://bugzilla.redhat.com/show_bug.cgi?id=490722 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-Biobase' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: R-RUnit-0.4.22-1.fc11

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6673 2009-06-18 11:05:37 -------------------------------------------------------------------------------- Name : R-RUnit Product : Fedora 11 Version : 0.4.22 Release : 1.fc11 URL : http://cran.r-project.org/web/packages/RUnit/index.html Summary : R Unit test framework Description : R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools -------------------------------------------------------------------------------- Update Information: Update to the lastest releases from Bioconductor Infrastructure for Biostrings- based genome data packages -------------------------------------------------------------------------------- ChangeLog: * Thu Jun 4 2009 pingou <pingou(a)pingoured.fr> 0.4.22-1 - Update to 0.4.22 -------------------------------------------------------------------------------- References: [ 1 ] Bug #490722 - Review Request: R-BSgenome - Infrastructure for Biostrings-based genome data packages https://bugzilla.redhat.com/show_bug.cgi?id=490722 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-RUnit' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: libxcb-1.2-4.fc11

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-7249 2009-07-02 04:59:34 -------------------------------------------------------------------------------- Name : libxcb Product : Fedora 11 Version : 1.2 Release : 4.fc11 URL : http://xcb.freedesktop.org/ Summary : A C binding to the X11 protocol Description : The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility. -------------------------------------------------------------------------------- Update Information: https://bugs.freedesktop.org/show_bug.cgi?id=17868 Apparently libxcb accidentally turned on "Nagle's algorithm" with TCP transmissions, which is especially bad for real-time stuff like X over the network. This causes a performance penalty for all X applications over the network, although some apps are more effected than others. -------------------------------------------------------------------------------- ChangeLog: * Wed Jun 24 2009 Warren Togami <wtogami(a)redhat.com> 1.2-4 - disable Nagle's algorithm for X TCP traffic as upstream decided this was a bad idea. This should be a significant performance boost. -------------------------------------------------------------------------------- References: [ 1 ] Bug #442158 - xcb severely cripples X11 performance https://bugzilla.redhat.com/show_bug.cgi?id=442158 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update libxcb' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: nntpgrab-0.5.0-1.fc11

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-7248 2009-07-02 04:59:34 -------------------------------------------------------------------------------- Name : nntpgrab Product : Fedora 11 Version : 0.5.0 Release : 1.fc11 URL : http://www.nntpgrab.nl Summary : Download files from the usenet Description : With this program it is possible to download files from the usenet -------------------------------------------------------------------------------- Update Information: Update to the latest stable version: 0.5.0 For the ChangeLog, see http://nntpgrab.nl/wiki/index.php/Version_history -------------------------------------------------------------------------------- ChangeLog: * Mon Jun 29 2009 Erik van Pienbroek <info(a)nntpgrab.nl> - 0.5.0-1 - Update to 0.5.0 - Added support for EPEL-5 * Tue May 5 2009 Erik van Pienbroek <info(a)nntpgrab.nl> - 0.4.91-1 - Update to 0.4.91 - Drop upstreamed patches -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update nntpgrab' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

14 years, 10 months

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Fedora 11 Update: kdebase-runtime-4.2.4-2.fc11

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-7240 2009-07-02 04:59:28 -------------------------------------------------------------------------------- Name : kdebase-runtime Product : Fedora 11 Version : 4.2.4 Release : 2.fc11 URL : http://www.kde.org/ Summary : K Desktop Environment - Runtime Description : Core runtime for the K Desktop Environment 4. -------------------------------------------------------------------------------- Update Information: This update prevents the Nepomuk server from being started unconditionally. -------------------------------------------------------------------------------- ChangeLog: * Mon Jun 29 2009 Lukáš Tinkl <ltinkl(a)redhat.com> - 4.2.4-2 - don't start nepomuk server unconditionally (#487322) * Fri May 29 2009 Lukáš Tinkl <ltinkl(a)redhat.com> - 4.2.4-1 - KDE 4.2.4 * Tue May 12 2009 Rex Dieter <rdieter(a)fedoraproject.org> - 4.2.3-2 - toolbar text under icons cut off (kde#186340) * Sun May 3 2009 Than Ngo <than(a)redhat.com> - 4.2.3-1 - 4.2.3 -------------------------------------------------------------------------------- References: [ 1 ] Bug #487322 - nepomukserver started with Nepomuk turned off https://bugzilla.redhat.com/show_bug.cgi?id=487322 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update kdebase-runtime' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

14 years, 10 months

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Fedora 10 Update: R-Biostrings-2.12.6-1.fc10

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6530 2009-06-18 10:58:41 -------------------------------------------------------------------------------- Name : R-Biostrings Product : Fedora 10 Version : 2.12.6 Release : 1.fc10 URL : http://bioconductor.org/packages/2.4/bioc/html/Biostrings.html Summary : String objects representing biological sequences Description : Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or set of sequences. -------------------------------------------------------------------------------- Update Information: Update to the lastest release of Bioconductor Infrastructure for Biostrings- based genome data packages -------------------------------------------------------------------------------- References: [ 1 ] Bug #490722 - Review Request: R-BSgenome - Infrastructure for Biostrings-based genome data packages https://bugzilla.redhat.com/show_bug.cgi?id=490722 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-Biostrings' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

14 years, 10 months

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Fedora 10 Update: R-BSgenome-1.12.2-1.fc10

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6530 2009-06-18 10:58:41 -------------------------------------------------------------------------------- Name : R-BSgenome Product : Fedora 10 Version : 1.12.2 Release : 1.fc10 URL : http://bioconductor.org/packages/2.4/bioc/html/BSgenome.html Summary : Infrastructure for Biostrings-based genome data packages Description : Infrastructure shared by all the Biostrings-based genome data packages -------------------------------------------------------------------------------- Update Information: Update to the lastest release of Bioconductor Infrastructure for Biostrings- based genome data packages -------------------------------------------------------------------------------- References: [ 1 ] Bug #490722 - Review Request: R-BSgenome - Infrastructure for Biostrings-based genome data packages https://bugzilla.redhat.com/show_bug.cgi?id=490722 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-BSgenome' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

14 years, 10 months

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Fedora 10 Update: R-BufferedMatrixMethods-1.8.0-3.fc10

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6530 2009-06-18 10:58:41 -------------------------------------------------------------------------------- Name : R-BufferedMatrixMethods Product : Fedora 10 Version : 1.8.0 Release : 3.fc10 URL : http://bioconductor.org/packages/release/bioc/html/BufferedMatrixMethods.... Summary : Microarray Data related methods that utlize BufferedMatrix Description : Microarray analysis methods that use BufferedMatrix objects -------------------------------------------------------------------------------- Update Information: Update to the lastest release of Bioconductor Infrastructure for Biostrings- based genome data packages -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- References: [ 1 ] Bug #490722 - Review Request: R-BSgenome - Infrastructure for Biostrings-based genome data packages https://bugzilla.redhat.com/show_bug.cgi?id=490722 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-BufferedMatrixMethods' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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package-announce July 2009