July 2009 - package-announce - Fedora Mailing-Lists

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-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6663 2009-06-18 11:05:01 -------------------------------------------------------------------------------- Name : R-Biobase Product : Fedora 9 Version : 2.4.1 Release : 1.fc9 URL : http://bioconductor.org/packages/2.4/bioc/html/Biobase.html Summary : Base functions for Bioconductor Description : Base functions for Bioconductor (bioconductor.org). Biobase provides functions that are needed by many other Bioconductor packages or which replace R functions. -------------------------------------------------------------------------------- Update Information: Update to the lastest releases of Bioconductor -------------------------------------------------------------------------------- ChangeLog: * Fri Jun 12 2009 pingou <pingou(a)pingoured.fr> 2.4.1-1 - Update to 2.4.1 - Remove bad french translation * Tue Apr 28 2009 pingou <pingou(a)pingoured.fr> 2.4.0-1 - Update to Bioconductor 2.4 and R-2.9.0 * Mon Feb 23 2009 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 2.2.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild * Wed Feb 18 2009 pingou <pingou-at-pingoured.fr> 2.2.2-1 - New update * Thu Jan 22 2009 pingou <pingoufc4-at-yahoo.fr> 2.2.1-1 - New update * Thu Nov 20 2008 pingou <pingoufc4-at-yahoo.fr> 2.2.0-2 - Correct the Source0 * Mon Oct 27 2008 pingou <pingoufc4-at-yahoo.fr> 2.2.0-1 - Update to version 2.2.0 for R >= 2.8.0 * Wed Jun 25 2008 pingou <pingoufc4-at-yahoo.fr> 2.0.1-1 - Update to version 2.0.1 * Fri May 2 2008 Pingou <pingoufc4(a)yahoo.fr> 2.0.0-1 - Update to bioconductor 2.2 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-Biobase' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: perl-Tk-804.028-9.fc11

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-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-7022 2009-06-27 01:16:57 -------------------------------------------------------------------------------- Name : perl-Tk Product : Fedora 11 Version : 804.028 Release : 9.fc11 URL : http://search.cpan.org/dist/Tk/ Summary : Perl Graphical User Interface ToolKit Description : This a re-port of a perl interface to Tk8.4. C code is derived from Tcl/Tk8.4.5. It also includes all the C code parts of Tix8.1.4 from SourceForge. The perl code corresponding to Tix's Tcl code is not fully implemented. Perl API is essentially the same as Tk800 series Tk800.025 but has not been verified as compliant. There ARE differences see pod/804delta.pod. -------------------------------------------------------------------------------- ChangeLog: * Mon Jun 22 2009 Andreas Bierfert <andreas.bierfert[AT]lowlatency.de> - 804.028-9 - fix getOpenFile (#487122) * Mon Jun 15 2009 Andreas Bierfert <andreas.bierfert[AT]lowlatency.de> - 804.028-8 - fix events (#489228, #491536, #506496) -------------------------------------------------------------------------------- References: [ 1 ] Bug #489228 - Keyboard does not work in perl-Tk programs https://bugzilla.redhat.com/show_bug.cgi?id=489228 [ 2 ] Bug #491536 - cssh is broken https://bugzilla.redhat.com/show_bug.cgi?id=491536 [ 3 ] Bug #506496 - tkmib failed https://bugzilla.redhat.com/show_bug.cgi?id=506496 [ 4 ] Bug #487122 - getOpenFile fails if -multiple is set https://bugzilla.redhat.com/show_bug.cgi?id=487122 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update perl-Tk' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: geeqie-1.0-0.16.beta1.fc11

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-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-5000 2009-05-15 22:45:13 -------------------------------------------------------------------------------- Name : geeqie Product : Fedora 11 Version : 1.0 Release : 0.16.beta1.fc11 URL : http://geeqie.sourceforge.net/ Summary : Image browser and viewer Description : *** Caution! This is a beta release. *** Be careful when evaluating this software. Geeqie has been forked from the GQview project with the goal of picking up development and integrating patches. It is an image viewer for browsing through graphics files. Its many features include single click file viewing, support for external editors, previewing images using thumbnails, and zoom. -------------------------------------------------------------------------------- Update Information: After three alpha releases, this is the first beta release of Geeqie. All planed features for 1.0 are implemented, but there are bugs. Please report any crash or odd behavior in the Geeqie bugtracker: https://sourceforge.net/tracker/?group_id=222125&atid=1054680 -------------------------------------------------------------------------------- ChangeLog: * Thu May 14 2009 Michael Schwendt <mschwendt(a)fedoraproject.org> - 1.0-0.16.beta1 - update to beta1 tarball -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update geeqie' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: pymol-1.2-4.20090612svn3729.fc11

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-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6457 2009-06-15 22:08:31 -------------------------------------------------------------------------------- Name : pymol Product : Fedora 11 Version : 1.2 Release : 4.20090612svn3729.fc11 URL : http://www.pymol.org Summary : PyMOL Molecular Graphics System Description : PyMOL is a molecular graphics system with an embedded Python interpreter designed for real-time visualization and rapid generation of high-quality molecular graphics images and animations. It is fully extensible and available free to everyone via the "Python" license. Although a newcomer to the field, PyMOL can already be used to generate stunning images and animations with ease. It can also perform many other valuable tasks (such as editing PDB files) to assist you in your research. -------------------------------------------------------------------------------- ChangeLog: * Fri Jun 12 2009 Tim Fenn <fenn(a)stanford.edu> - 1.2-4.20090612svn3729 - update to SVN 3729, fixes contrib module bug -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update pymol' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: eclipse-3.4.2-11.fc11

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-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6919 2009-06-23 20:28:47 -------------------------------------------------------------------------------- Name : eclipse Product : Fedora 11 Version : 3.4.2 Release : 11.fc11 URL : http://www.eclipse.org/ Summary : An open, extensible IDE Description : The Eclipse platform is designed for building integrated development environments (IDEs), server-side applications, desktop applications, and everything in between. -------------------------------------------------------------------------------- Update Information: Fixes in pdebuild script - one that fixes symlinks creation and one that fixes compilations for arch specific fragments. -------------------------------------------------------------------------------- ChangeLog: * Thu Jun 18 2009 Alexander Kurtakov <akurtako(a)redhat.com> 1:3.4.2-11 - Fix package-build template to add target for -Dconfigs. * Tue Apr 21 2009 Andrew Overholt <overholt(a)redhat.com> 1:3.4.2-10 - Update "package build" patch to not nest symlinks (Elliott Baron). - RHBZ#496963. -------------------------------------------------------------------------------- References: [ 1 ] Bug #496963 - PDE Build wrapper script does not handle symbolic links properly https://bugzilla.redhat.com/show_bug.cgi?id=496963 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update eclipse' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 10 Update: perl-namespace-clean-0.11-1.fc10

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-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6861 2009-06-23 20:27:54 -------------------------------------------------------------------------------- Name : perl-namespace-clean Product : Fedora 10 Version : 0.11 Release : 1.fc10 URL : http://search.cpan.org/dist/namespace-clean Summary : Keep your namespace tidy Description : When you define a function, or import one, into a Perl package, it will naturally also be available as a method. This does not per se cause problems, but it can complicate subclassing and, for example, plugin classes that are included via multiple inheritance by loading them as base classes. The 'namespace::clean' pragma will remove all previously declared or imported symbols at the end of the current package's compile cycle. Functions called in the package itself will still be bound by their name, but they won't show up as methods on your class or instances. -------------------------------------------------------------------------------- ChangeLog: * Thu Apr 2 2009 Chris Weyl <cweyl(a)alumni.drew.edu> 0.11-1 - update to 0.11 * Thu Feb 26 2009 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 0.09-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild * Tue Dec 2 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.09-1 - update to 0.09 - note BR change from Scope::Guard to B::Hooks::EndOfScope -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update perl-namespace-clean' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 10 Update: perl-Mouse-0.25-1.fc10

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-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6874 2009-06-23 20:28:08 -------------------------------------------------------------------------------- Name : perl-Mouse Product : Fedora 10 Version : 0.25 Release : 1.fc10 URL : http://search.cpan.org/dist/Mouse Summary : Moose minus the antlers Description : Moose, a powerful metaobject-fuelled extension of the Perl 5 object system, is wonderful. (For more information on Moose, please see 'perldoc Moose' after installing the perl-Moose package.) Unfortunately, it's a little slow. Though significant progress has been made over the years, the compile time penalty is a non-starter for some applications. Mouse aims to alleviate this by providing a subset of Moose's functionality, faster. -------------------------------------------------------------------------------- ChangeLog: * Mon Jun 22 2009 Chris Weyl <cweyl(a)alumni.drew.edu> 0.25-1 - auto-update to 0.25 (by cpan-spec-update 0.01) - altered req on perl(Scalar::Util) (1.19 => 1.14) * Tue Jun 2 2009 Chris Weyl <cweyl(a)alumni.drew.edu> 0.23-1 - auto-update to 0.23 (by cpan-spec-update 0.01) - altered br on perl(Test::Exception) (0 => 0.21) - altered br on perl(ExtUtils::MakeMaker) (0 => 6.42) - altered br on perl(Test::More) (0 => 0.8) * Sun May 3 2009 Chris Weyl <cweyl(a)alumni.drew.edu> 0.22-1 - update to 0.22 * Thu Apr 2 2009 Chris Weyl <cweyl(a)alumni.drew.edu> 0.19-1 - update to 0.19 * Thu Feb 26 2009 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 0.17-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild * Sun Feb 22 2009 Chris Weyl <cweyl(a)alumni.drew.edu> 0.17-1 - update to 0.17 * Tue Feb 10 2009 Chris Weyl <cweyl(a)alumni.drew.edu> 0.16-1 - update to 0.16 * Tue Dec 30 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.14-1 - update to 0.14 * Tue Dec 16 2008 Chris Weyl <cweyl(a)alumni.drew.edu> 0.13-1 - update to 0.13 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update perl-Mouse' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 10 Update: numactl-2.0.3-2.fc10

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-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-7204 2009-07-02 04:59:00 -------------------------------------------------------------------------------- Name : numactl Product : Fedora 10 Version : 2.0.3 Release : 2.fc10 URL : ftp://oss.sgi.com/www/projects/libnuma/download Summary : Library for tuning for Non Uniform Memory Access machines Description : Simple NUMA policy support. It consists of a numactl program to run other programs with a specific NUMA policy and a libnuma to do allocations with NUMA policy in applications. -------------------------------------------------------------------------------- ChangeLog: * Mon Jun 29 2009 Neil Horman <nhorman(a)redhat.com> - 2.0.3-1 - Updated to latest upstream (bz 506795) * Mon Feb 9 2009 Neil Horman <nhorman(a)redhat.com> - 2.0.2-3 - Remove warning from libnuma (bz 484552) -------------------------------------------------------------------------------- References: [ 1 ] Bug #506795 - numactl not working on systems with non-sequential node numbering, upstream ok https://bugzilla.redhat.com/show_bug.cgi?id=506795 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update numactl' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 11 Update: zynjacku-5-1.fc11

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-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-6588 2009-06-18 11:00:26 -------------------------------------------------------------------------------- Name : zynjacku Product : Fedora 11 Version : 5 Release : 1.fc11 URL : http://home.gna.org/zynjacku/ Summary : LV2 synths and plugins host Description : zynjacku is JACK based, GTK (2.x) host for LV2 synths. It has one JACK MIDI input port (routed to all hosted synths) and one (two for stereo synths) JACK audio output port per plugin. Such design provides multi-timbral sound by running several synth plugins. zynjacku is a nunchaku weapon for JACK audio synthesis. You have solid parts for synthesis itself and you have flexible part that allows synthesis to suit your needs. lv2rack is a host for LV2 effect plugins. -------------------------------------------------------------------------------- Update Information: * slv2 is no longer required * cache list of suitable plugins * speedup plugin list window * new tool, zynspect, that can be used to list and inspect available lv2 plguins. * Fix assert when restoring rack presets * By default, sort plugins by name * Experimental support for dynmanifest extension. Combined with NASPRO allows loading ladspa plugins in lv2rack. * Set plugin GUI window's role to "plugin_ui" (for WM kludges etc) * single plugin mode for lv2rack * Hide external UIs when zynjacku/lv2rack quits -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update zynjacku' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 10 Update: xorg-x11-drv-s3virge-1.10.2-1.fc10

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2009-4829 2009-05-12 02:50:56 -------------------------------------------------------------------------------- Name : xorg-x11-drv-s3virge Product : Fedora 10 Version : 1.10.2 Release : 1.fc10 URL : http://www.x.org Summary : Xorg X11 s3virge video driver Description : X.Org X11 s3virge video driver. -------------------------------------------------------------------------------- Update Information: Fixes 24+32 framebuffer modes. -------------------------------------------------------------------------------- ChangeLog: * Fri May 8 2009 Adam Jackson <ajax(a)redhat.com> 1.10.2-1 - s3virge 1.10.2 -------------------------------------------------------------------------------- References: [ 1 ] Bug #487422 - Xorg fails to start without xorg.conf: Internal error: invalid bpp (32) in S3VScreenInit https://bugzilla.redhat.com/show_bug.cgi?id=487422 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update xorg-x11-drv-s3virge' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at http://fedoraproject.org/keys --------------------------------------------------------------------------------

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package-announce July 2009