package-announce November 2011

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Fedora 15 Update: R-sciplot-1.0.9-1.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-sciplot Product : Fedora 15 Version : 1.0.9 Release : 1.fc15 URL : http://cran.r-project.org/web/packages/sciplot/index.html Summary : Scientific Graphing Functions for Factorial Designs Description : A collection of functions that creates graphs with error bars for data collected from one-way or higher factorial designs -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 1.0.9-1 - update to 1.0-9 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-sciplot' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 15 Update: R-statmod-1.4.13-1.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-statmod Product : Fedora 15 Version : 1.4.13 Release : 1.fc15 URL : http://cran.r-project.org/web/packages/statmod/ Summary : Statistical modeling Description : Various statistical modeling functions including growth curve comparisons, limiting dilution analysis, mixed linear models, heteroscedastic regression, Tweedie family generalized linear models, the inverse-Gaussian distribution and Gauss quadrature. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.4.13-1 - update to 1.4.13 * Wed Jun 22 2011 pingou <pingou(a)pingoured.fr> 1.4.10-1 - Update to version 1.4.10 * Tue Mar 15 2011 pingou <pingou(a)pingoured.fr> 1.4.9-1 - Update to version 1.4.9 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-statmod' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 15 Update: R-widgetTools-1.32.0-2.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-widgetTools Product : Fedora 15 Version : 1.32.0 Release : 2.fc15 URL : http://bioconductor.org/packages/release/bioc/html/widgetTools.html Summary : Bioconductor tools to support tcltk widgets Description : This package contains tools to support the construction of tcltk widgets. This library is part of the bioconductor (bioconductor.org) project -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.32.0-2 - rebuild for R 2.14.0 * Thu Nov 3 2011 pingou <pingou(a)pingoured.fr> 1.32.0-1 - Update to version 1.32.0 * Wed Jun 22 2011 pingou <pingou(a)pingoured.fr> 1.30.0-1 - Update to version 1.30.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-widgetTools' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 15 Update: R-BufferedMatrixMethods-1.18.0-1.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-BufferedMatrixMethods Product : Fedora 15 Version : 1.18.0 Release : 1.fc15 URL : http://bioconductor.org/packages/release/bioc/html/BufferedMatrixMethods.ht… Summary : Microarray Data related methods that utlize BufferedMatrix Description : Microarray analysis methods that use BufferedMatrix objects -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.18.0-1 - update to 1.18.0 * Sun Jul 3 2011 pingou <pingou(a)pingoured.fr> 1.16.0-1 - Update to version 1.16.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-BufferedMatrixMethods' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 15 Update: R-RSQLite-0.10.0-1.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-RSQLite Product : Fedora 15 Version : 0.10.0 Release : 1.fc15 URL : http://cran.r-project.org/web/packages/RSQLite/index.html Summary : SQLite database interface for R Description : A SQLite database interface definition for communication between R and SQLite databases. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 0.10.0-1 - update to 0.10.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-RSQLite' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 15 Update: R-msm-1.1-1.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-msm Product : Fedora 15 Version : 1.1 Release : 1.fc15 URL : http://cran.r-project.org/web/packages/msm/ Summary : Multi-state Markov and hidden Markov models in continuous time Description : Functions for fitting general continuous-time Markov and hidden Markov multi-state models to longitudinal data. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates. A variety of observation schemes are supported, including processes observed at arbitrary times, completely-observed processes, and censored states. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Tue Nov 8 2011 Tom Callaway <spot(a)fedoraproject.org> - 1.1-1 - update to 1.1 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-msm' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 15 Update: R-BSgenome-1.22.0-1.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-BSgenome Product : Fedora 15 Version : 1.22.0 Release : 1.fc15 URL : http://bioconductor.org/packages/release/bioc/html/BSgenome.html Summary : Infrastructure for Biostrings-based genome data packages Description : Infrastructure shared by all the Biostrings-based genome data packages -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.22.0-1 - update to 1.22.0 * Sat Jul 2 2011 pingou <pingou(a)pingoured.fr> 1.20.0-1 - Update to version 1.20.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-BSgenome' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 15 Update: R-hgu95av2cdf-2.9.1-1.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-hgu95av2cdf Product : Fedora 15 Version : 2.9.1 Release : 1.fc15 URL : http://www.bioconductor.org/packages/2.9/data/annotation/html/hgu95av2cdf.h… Summary : HG_U95Av2.CDF data file Description : Environment representing the HG_U95Av2.CDF file. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 2.9.1-1 - update to 2.9.1 * Wed Jun 22 2011 pingou <pingou(a)pingoured.fr> 2.8.0-1 - Update to version 2.8.0 * Tue Mar 15 2011 pingou <pingou(a)pingoured.fr> 2.7.0-1 - Update to version 2.7.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-hgu95av2cdf' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 15 Update: R-affy-1.32.0-1.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-affy Product : Fedora 15 Version : 1.32.0 Release : 1.fc15 URL : http://bioconductor.org/packages/2.9/bioc/html/affy.html Summary : Methods for Affymetrix Oligonucleotide Arrays Description : The package contains functions for exploratory oligonucleotide array analysis. The dependancy to tkWidgets only concerns few convenience functions. 'affy' is fully functional without it. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.32.0-1 - update to 1.32.0 * Wed Jun 22 2011 pingou <pingou(a)pingoured.fr> 1.30.0-1 - Update to version 1.30.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-affy' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 15 Update: R-Rcompression-0.93.2-3.fc15
by updates＠fedoraproject.org 28 Nov '11

28 Nov '11

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15950 2011-11-15 23:42:05 -------------------------------------------------------------------------------- Name : R-Rcompression Product : Fedora 15 Version : 0.93.2 Release : 3.fc15 URL : http://www.omegahat.org/Rcompression/ Summary : R Package for in-memory compression Description : This package is a basic R interface to the zlib and bzip2 facilities for compressing and uncompressing data that are in memory rather than in files. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-Rcompression' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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package-announce November 2011