November 2011 - package-announce - Fedora Mailing-Lists

Fedora 16 Update: scalapack-1.7.5-14.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : scalapack Product : Fedora 16 Version : 1.7.5 Release : 14.fc16 URL : http://www.netlib.org/lapack-dev/ Summary : A subset of LAPACK routines redesigned for heterogeneous computing Description : The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. It is currently written in a Single-Program-Multiple-Data style using explicit message passing for inter-processor communication. It assumes matrices are laid out in a two-dimensional block cyclic decomposition. ScaLAPACK is designed for heterogeneous computing and is portable on any computer that supports MPI or PVM. Like LAPACK, the ScaLAPACK routines are based on block-partitioned algorithms in order to minimize the frequency of data movement between different levels of the memory hierarchy. (For such machines, the memory hierarchy includes the off-processor memory of other processors, in addition to the hierarchy of registers, cache, and local memory on each processor.) The fundamental building blocks of the ScaLAPACK library are distributed memory versions (PBLAS) of the Level 1, 2 and 3 BLAS, and a set of Basic Linear Algebra Communication Subprograms (BLACS) for communication tasks that arise frequently in parallel linear algebra computations. In the ScaLAPACK routines, all inter-processor communication occurs within the PBLAS and the BLACS. One of the design goals of ScaLAPACK was to have the ScaLAPACK routines resemble their LAPACK equivalents as much as possible. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Aug 3 2011 Jussi Lehtola <jussilehtola(a)fedoraproject.org> - 1.7.5-14 - Bump spec. * Wed Aug 3 2011 Jussi Lehtola <jussilehtola(a)fedoraproject.org> - 1.7.5-13 - Honor MPI guidelines wrt placement of libraries. - Drop unnecessary module file. - A few rpmlint fixes. -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update scalapack' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora 16 Update: rkward-0.5.7-2.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : rkward Product : Fedora 16 Version : 0.5.7 Release : 2.fc16 URL : http://rkward.sourceforge.net/ Summary : Graphical frontend for R language Description : RKWard aims to provide an easily extensible, easy to use IDE/GUI for the R-project. RKWard tries to combine the power of the R-language with the (relative) ease of use of commercial statistics tools. Long term plans include integration with office suites -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 0.5.7-2 - rebuild for R 2.14.0 * Sun Oct 23 2011 Pierre-Yves Chibon <pingou(a)pingoured.fr> 0.5.7-1 - Update to 0.5.7 * Fri Oct 7 2011 Tom Callaway <spot(a)fedoraproject.org> 0.5.6-3 - rebuild for R 2.13.2 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update rkward' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora 16 Update: rpy-2.2.4-1.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : rpy Product : Fedora 16 Version : 2.2.4 Release : 1.fc16 URL : http://rpy.sourceforge.net Summary : Python interface to the R language Description : RPy provides a robust Python interface to the R programming language. It can manage all kinds of R objects and can execute arbitrary R functions. All the errors from the R language are converted to Python exceptions. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 2.2.4-1 - update to 2.2.4 - rebuild for R 2.14.0 * Fri Oct 7 2011 Tom Callaway <spot(a)fedoraproject.org> - 2.2.3-1 - update to 2.2.3 - rebuild for R 2.13.2 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update rpy' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora 16 Update: graphviz-2.28.0-10.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : graphviz Product : Fedora 16 Version : 2.28.0 Release : 10.fc16 URL : http://www.graphviz.org/ Summary : Graph Visualization Tools Description : A collection of tools for the manipulation and layout of graphs (as in nodes and edges, not as in barcharts). -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 2.28.0-10 - rebuild for R 2.14.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update graphviz' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora 16 Update: R-zoo-1.7.6-2.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : R-zoo Product : Fedora 16 Version : 1.7.6 Release : 2.fc16 URL : http://cran.r-project.org/web/packages/zoo/index.html Summary : Z's ordered observations for irregular time series Description : An S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors. zoo's key design goals are independence of a particular index/date/ time class and consistency with with ts and base R by providing methods to extend standard generics. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Tue Nov 8 2011 Tom Callaway <spot(a)fedoraproject.org> 1.7.6-2 - disable tests on el4 - add el conditional for tex BR * Tue Nov 8 2011 Tom Callaway <spot(a)fedoraproject.org> 1.7.6-1 - convert to new model - rebuild for 2.14.0 * Mon Nov 7 2011 Orion Poplawski <orion(a)cora.nwra.com> 1.7-6 - Update to 1.7-6 - No longer noarch -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-zoo' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora 16 Update: R-DBI-0.2.5-3.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : R-DBI Product : Fedora 16 Version : 0.2.5 Release : 3.fc16 URL : http://cran.r-project.org/web/packages/DBI/index.html Summary : Database interface module for R Description : A database interface (DBI) definition for communication between R and relational database management systems. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Mon Nov 7 2011 Tom Callaway <spot(a)fedoraproject.org> - 0.2.5-3 - rebuild for R 2.14.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-DBI' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora 16 Update: R-qtl-1.21.2-2.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : R-qtl Product : Fedora 16 Version : 1.21.2 Release : 2.fc16 URL : http://www.rqtl.org/ Summary : Tools for analyzing QTL experiments Description : R-qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. Our goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. We have implemented the main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses. The current version of R-qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation and Haley-Knott regression. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Tue Nov 8 2011 Tom Callaway <spot(a)fedoraproject.org> - 1.21.2-2 - rebuild for R 2.14.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-qtl' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora 16 Update: R-mvtnorm-0.9.9991-1.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : R-mvtnorm Product : Fedora 16 Version : 0.9.9991 Release : 1.fc16 URL : http://cran.r-project.org/web/packages/mvtnorm/index.html Summary : Multivariate normal and T distribution R Package Description : This R package computes multivariate normal and t probabilities, quantiles and densities. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Tue Nov 8 2011 Tom Callaway <spot(a)fedoraproject.org> - 0.9.9991-1 - update spec - update to 0.9-9991 - rebuild for R-2.14.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-mvtnorm' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora 16 Update: R-nws-1.7.0.1-3.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : R-nws Product : Fedora 16 Version : 1.7.0.1 Release : 3.fc16 URL : http://cran.r-project.org/web/packages/nws/index.html Summary : R functions for NetWorkSpaces and Sleigh Description : Provides coordination and parallel execution facilities, as well as limited cross-language data exchange, using the netWorkSpaces server developed by REvolution Computing. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Tue Nov 8 2011 Tom Callaway <spot(a)fedoraproject.org> - 1:1.7.0.1-3 - rebuild for R 2.14.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-nws' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora 16 Update: R-abind-1.3.0-1.fc16

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2011-15910 2011-11-15 23:36:23 -------------------------------------------------------------------------------- Name : R-abind Product : Fedora 16 Version : 1.3.0 Release : 1.fc16 URL : http://cran.r-project.org/web/packages/abind/index.html Summary : Combine multi-dimensional arrays Description : Combine multi-dimensional arrays. This is a generalization of cbind and rbind. Takes a sequence of vectors, matrices, or arrays and produces a single array of the same or higher dimension. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R components. -------------------------------------------------------------------------------- ChangeLog: * Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 1.3.0-1 - update to 1.3-0 - rebuild for R 2.14.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks https://bugzilla.redhat.com/show_bug.cgi?id=753188 [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R https://bugzilla.redhat.com/show_bug.cgi?id=753181 [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases https://bugzilla.redhat.com/show_bug.cgi?id=753182 [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression https://bugzilla.redhat.com/show_bug.cgi?id=753185 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-abind' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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package-announce November 2011