package-announce May 2018

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Fedora 28 Update: R-statnet.common-4.0.0-2.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-statnet.common Product : Fedora 28 Version : 4.0.0 Release : 2.fc28 URL : https://cran.r-project.org/web/packages/statnet.common/index.html Summary : Common R Scripts and Utilities Used by the Statnet Project Software Description : Non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others. -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 28 Update: R-sp-1.2.7-2.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-sp Product : Fedora 28 Version : 1.2.7 Release : 2.fc28 URL : https://cran.r-project.org/web/packages/sp/index.html Summary : Classes and Methods for Spatial Data Description : Classes and methods for spatial data; the classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- ChangeLog: * Thu May 17 2018 Tom Callaway <spot(a)fedoraproject.org> - 1.2.7-2 - rebuild for R 3.5.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora 28 Update: R-stringdist-0.9.4.7-2.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-stringdist Product : Fedora 28 Version : 0.9.4.7 Release : 2.fc28 URL : https://cran.r-project.org/web/packages/stringdist/index.html Summary : Approximate String Matching and String Distance Functions Description : Implements an approximate string matching version of R's native 'match' function. Can calculate various string distances based on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An implementation of soundex is provided as well. Distances can be computed between character vectors while taking proper care of encoding or between integer vectors representing generic sequences. -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora 28 Update: R-sourcetools-0.1.7-2.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-sourcetools Product : Fedora 28 Version : 0.1.7 Release : 2.fc28 URL : https://cran.r-project.org/web/packages/sourcetools/index.html Summary : Tools for Reading, Tokenizing and Parsing R Code Description : Tools for the reading and tokenization of R code. The 'sourcetools' package provides both an R and C++ interface for the tokenization of R code, and helpers for interacting with the tokenized representation of R code. -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora 28 Update: R-stringi-1.2.2-1.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-stringi Product : Fedora 28 Version : 1.2.2 Release : 1.fc28 URL : https://cran.r-project.org/web/packages/stringi/index.html Summary : Character String Processing Facilities Description : Allows for fast, correct, consistent, portable, as well as convenient character string/text processing in every locale and any native encoding. Owing to the use of the ICU library, the package provides R users with platform-independent functions known to Java, Perl, Python, PHP, and Ruby programmers. Available features include: pattern searching (e.g., with ICU Java-like regular expressions or the Unicode Collation Algorithm), random string generation, case mapping, string transliteration, concatenation, Unicode normalization, date-time formatting and parsing, etc. -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- ChangeLog: * Wed May 16 2018 Tom Callaway <spot(a)fedoraproject.org> - 1.2.2-1 - update to 1.2.2, rebuild for R 3.5.0 * Mon Apr 30 2018 Pete Walter <pwalter(a)fedoraproject.org> - 1.1.7-2 - Rebuild for ICU 61.1 * Wed Apr 25 2018 Elliott Sales de Andrade <quantum.analyst(a)gmail.com> - 1.1.7-1 - Update to latest version -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora 28 Update: R-rlecuyer-0.3.4-5.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-rlecuyer Product : Fedora 28 Version : 0.3.4 Release : 5.fc28 URL : http://cran.r-project.org/web/packages/rlecuyer/index.html Summary : R interface to RNG with multiple streams Description : Provides an interface to the C implementation of the random number generator with multiple independent streams developed by L'Ecuyer et al (2002). The main purpose of this package is to enable the use of this random number generator in parallel R applications. -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- ChangeLog: * Fri May 18 2018 Tom Callaway <spot(a)fedoraproject.org> - 0.3.4-5 - rebuild for R 3.5.0 * Wed Feb 7 2018 Fedora Release Engineering <releng(a)fedoraproject.org> - 0.3.4-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora 28 Update: R-Rmpfr-0.7.0-2.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-Rmpfr Product : Fedora 28 Version : 0.7.0 Release : 2.fc28 URL : https://cran.r-project.org/web/packages/Rmpfr/index.html Summary : R MPFR - Multiple Precision Floating-Point Reliable Description : Arithmetic (via S4 classes and methods) for arbitrary precision floating point numbers, including transcendental ("special") functions. To this end, the package interfaces to the 'LGPL' licensed 'MPFR' (Multiple Precision Floating-Point Reliable) Library which itself is based on the 'GMP' (GNU Multiple Precision) Library. -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora 28 Update: R-Rsamtools-1.32.0-1.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-Rsamtools Product : Fedora 28 Version : 1.32.0 Release : 1.fc28 URL : http://www.bioconductor.org/packages/release/bioc/html/Rsamtools.html Summary : R interface to samtools Description : This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities (see 'LICENCE') for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files. -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- ChangeLog: * Thu May 17 2018 Tom Callaway <spot(a)fedoraproject.org> - 1.32.0-1 - update to 1.32.0 -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora 28 Update: R-ROC-1.56.0-1.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-ROC Product : Fedora 28 Version : 1.56.0 Release : 1.fc28 URL : http://bioconductor.org/packages/release/bioc/html/ROC.html Summary : Utilities for ROC Description : Utilities for ROC with uarray focus. -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- ChangeLog: * Fri May 18 2018 Tom Callaway <spot(a)fedoraproject.org> - 1.56.0-1 - update to 1.56.0 * Wed Feb 7 2018 Fedora Release Engineering <releng(a)fedoraproject.org> - 1.46.0-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora 28 Update: R-Rsolid-0.9.31-24.fc28
by updates＠fedoraproject.org 31 May '18

31 May '18

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2018-050da4f07f 2018-05-31 14:34:44.120573 -------------------------------------------------------------------------------- Name : R-Rsolid Product : Fedora 28 Version : 0.9.31 Release : 24.fc28 URL : http://rafalab.jhsph.edu/Rsolid/ Summary : Quantile normalization and base calling for second generation sequencing data Description : Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance. -------------------------------------------------------------------------------- Update Information: Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun doesn't build right now). Most updated to the latest version. -------------------------------------------------------------------------------- ChangeLog: * Fri May 18 2018 Tom Callaway <spot(a)fedoraproject.org> - 0.9.31-24 - rebuild for R 3.5.0 * Wed Feb 7 2018 Fedora Release Engineering <releng(a)fedoraproject.org> - 0.9.31-23 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild -------------------------------------------------------------------------------- References: [ 1 ] Bug #1567573 - rpy-2.9.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1567573 [ 2 ] Bug #1570804 - R-3.5.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=1570804 [ 3 ] Bug #1555530 - R-affyio: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555530 [ 4 ] Bug #1555528 - R-affy: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555528 [ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555498 [ 6 ] Bug #1555532 - R-bitops: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555532 [ 7 ] Bug #1555533 - R-caTools: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555533 [ 8 ] Bug #1560254 - R-curl-3.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1560254 [ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1575172 [ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available https://bugzilla.redhat.com/show_bug.cgi?id=1563656 [ 11 ] Bug #1555547 - R-maanova: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555547 [ 12 ] Bug #1555552 - R-msm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555552 [ 13 ] Bug #1555555 - R-multtest: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555555 [ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555556 [ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555561 [ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555564 [ 17 ] Bug #1555515 - R-ROC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555515 [ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555516 [ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555521 [ 20 ] Bug #1555569 - R-statmod: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555569 [ 21 ] Bug #1574116 - R-stringi-1.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=1574116 [ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555574 [ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555575 [ 24 ] Bug #1555525 - R-XML: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1555525 [ 25 ] Bug #1405667 - R-zoo-1.8-1 is available https://bugzilla.redhat.com/show_bug.cgi?id=1405667 [ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities https://bugzilla.redhat.com/show_bug.cgi?id=1578961 [ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') https://bugzilla.redhat.com/show_bug.cgi?id=1578963 [ 28 ] Bug #1556527 - v8-314: FTBFS in F28 https://bugzilla.redhat.com/show_bug.cgi?id=1556527 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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