package-announce October 2021

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Fedora 35 Update: jmol-14.31.59-1.fc35
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-3423b15ce6 2021-10-31 01:07:25.016630 -------------------------------------------------------------------------------- Name : jmol Product : Fedora 35 Version : 14.31.59 Release : 1.fc35 URL : http://www.jmol.org/ Summary : Java viewer for chemical structures in 3D Description : Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. -------------------------------------------------------------------------------- Update Information: Changes in jmol 14.31.55: - new feature: `COMPARE {2.1} {1.1} BONDS SMILES HYDROGEN` - adds `HYDROGEN` check for aligning methyl and methylene groups properly - bug fix: `(-1.4567).format("%5.2f")` missing minus sign - bug fix: `UnitCell` transform should be included in `COMPARE FRAME` - bug fix: `CifReader` fix for lack of case sensitivity in some `GEOM_*` records for some COD and CCDC files - bug fix: `FilesReader` fails with zip file pipe - bug fix: Polyhedra `SMILES` not working for chirality check -- was never fully tested - bug fix: Resolver can fail for certain CIF files resolved to MOL incorrectly - bug fix: TopoCif update - new feature: `COMPARE` additions: ``` // compare FRAMES` // compare {model1} {model2} POLYHEDRA // compare {model1} {model2} SUBSET {polyhedra} POLYHEDRA // compare {model1} {model2} ATOMS @atom1 @atom2 POLYHEDRA // compare FRAMES POLYHEDRA ``` - new feature: `compare()` additions ``` // A, B, int[] map // A, B, int[] map, stddev ``` Changes in jmol 14.31.56: - bug fix: `compare({2.1}, {1.1}, "map", "H")` broken Changes in jmol 14.31.57: - bug fix: `magCIF` can not handle fractions 2/5, 3/10, etc. Changes in jmol 14.31.58: - bug fix: adjustments to `TopoCifParser` pre-release of `Topology.dic` Changes in jmol 14.31.59: - bug fix: `CIFReader` should allow unlooped items for all needed tags - bug fix: `JSpecView` writer broken in 14.31.50 -------------------------------------------------------------------------------- ChangeLog: * Thu Oct 21 2021 Jerry James <loganjerry(a)gmail.com> - 14.31.59-1 - Version 14.31.59 * Mon Oct 11 2021 Jerry James <loganjerry(a)gmail.com> - 14.31.57-1 - Version 14.31.57 -------------------------------------------------------------------------------- References: [ 1 ] Bug #2009046 - jmol-14.31.57 is available https://bugzilla.redhat.com/show_bug.cgi?id=2009046 [ 2 ] Bug #2015353 - jmol-14.31.59 is available https://bugzilla.redhat.com/show_bug.cgi?id=2015353 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-3423b15ce6' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 35 Update: texstudio-4.0.2-1.fc35
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-54ffeb0c8c 2021-10-31 01:07:25.016611 -------------------------------------------------------------------------------- Name : texstudio Product : Fedora 35 Version : 4.0.2 Release : 1.fc35 URL : https://www.texstudio.org Summary : A feature-rich editor for LaTeX documents Description : TeXstudio gives you an environment where you can easily create and manage LaTeX documents. It provides modern writing support, like interactive spell checking, code folding, syntax highlighting, integrated pdf viewer and various assistants. Also it serves as a starting point from where you can easily run all necessary LaTeX tools. -------------------------------------------------------------------------------- Update Information: - update to 4.0.2 - https://raw.githubusercontent.com/texstudio- org/texstudio/master/utilities/manual/CHANGELOG.txt -------------------------------------------------------------------------------- ChangeLog: * Sat Oct 23 2021 Johannes Lips <hannes(a)fedoraproject.org> 4.0.2-1 - Update to latest upstream release 4.0.2 * Mon Oct 11 2021 Johannes Lips <hannes(a)fedoraproject.org> 4.0.1-1 - Update to latest upstream release 4.0.1 * Wed Sep 29 2021 Christian Dersch <lupinix(a)mailbox.org> - 4.0.0-2 - Use quazip-qt5, fix include and linker variables for quazip5 * Sun Sep 26 2021 Johannes Lips <hannes(a)fedoraproject.org> 4.0.0-1 - Update to latest upstream release 4.0.0 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-54ffeb0c8c' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 35 Update: cocoalib-0.99717-1.fc35
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-e56013245f 2021-10-31 01:07:25.016590 -------------------------------------------------------------------------------- Name : cocoalib Product : Fedora 35 Version : 0.99717 Release : 1.fc35 URL : http://cocoa.dima.unige.it/cocoalib/ Summary : C++ library for computations in commutative algebra Description : The CoCoA C++ library offers functions to perform calculations in Computational Commutative Algebra, and some other related areas. The library is designed to be pleasant to use while offering good run-time performance. -------------------------------------------------------------------------------- Update Information: Changes in version 0.99716: - The apply interface, which tended to conflict with `std::apply`, has been removed - Bug fix for 32-bit systems - Improvements to and bug fixes in the examples - Fixed `IsInRadical(f,(0))` Changes in version 0.99717: - Remove incorrect assertion from `SmallPrime` constructor - Correct nvars check in `UnivariateIndetIndex` - Add `RandomSmallPrime` -------------------------------------------------------------------------------- ChangeLog: * Fri Oct 22 2021 Jerry James <loganjerry(a)gmail.com> - 0.99717-1 - Version 0.99717 * Mon Oct 11 2021 Jerry James <loganjerry(a)gmail.com> - 0.99716-1 - Version 0.99716 - Drop upstreamed -apply and -32bit patches -------------------------------------------------------------------------------- References: [ 1 ] Bug #2012613 - cocoalib-0.99716 is available https://bugzilla.redhat.com/show_bug.cgi?id=2012613 [ 2 ] Bug #2016603 - cocoalib-0.99717 is available https://bugzilla.redhat.com/show_bug.cgi?id=2016603 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-e56013245f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 35 Update: cli11-2.1.2-1.fc35
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-4ecad8ddcc 2021-10-31 01:07:25.016502 -------------------------------------------------------------------------------- Name : cli11 Product : Fedora 35 Version : 2.1.2 Release : 1.fc35 URL : https://github.com/CLIUtils/CLI11 Summary : Command line parser for C++11 Description : CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface. -------------------------------------------------------------------------------- Update Information: Changes in version 2.1.1: - A collision with min/max macros on Windows has been fixed. #642 - Tests pass with Boost again #646 - Running the pre-commit hooks in development no longer requires docker for clang-format #647 Changes in version 2.1.2: - Use main for the main branch of the repository #657 - Bugfix(cmake): Enforce at least C++11 when using CMake target #656 - Build: Don't run doxygen and CTest includes if a submodule #656 - Build: Avoid a warning on CMake 3.22 #656 - Build: Support compiling the tests with an external copy of Catch2 #653 -------------------------------------------------------------------------------- ChangeLog: * Thu Oct 21 2021 Jerry James <loganjerry(a)gmail.com> - 2.1.2-1 - Version 2.1.2 - Drop the -catch patch, no longer necessary * Sat Oct 2 2021 Jerry James <loganjerry(a)gmail.com> - 2.1.1-1 - Version 2.1.1 -------------------------------------------------------------------------------- References: [ 1 ] Bug #2009136 - cli11-2.1.1 is available https://bugzilla.redhat.com/show_bug.cgi?id=2009136 [ 2 ] Bug #2015314 - cli11-2.1.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=2015314 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-4ecad8ddcc' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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[SECURITY] Fedora 33 Update: stb-0-0.7.20211022gitaf1a5bc.fc33
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-0511a38484 2021-10-31 01:01:18.359003 -------------------------------------------------------------------------------- Name : stb Product : Fedora 33 Version : 0 Release : 0.7.20211022gitaf1a5bc.fc33 URL : https://github.com/nothings/stb Summary : Single-file public domain libraries for C/C++ Description : Single-file public domain libraries for C/C++. -------------------------------------------------------------------------------- Update Information: Security fix for CVE-2021-42715 and CVE-2021-42716 -------------------------------------------------------------------------------- ChangeLog: * Fri Oct 22 2021 Benjamin A. Beasley <code(a)musicinmybrain.net> 0-0.7 - Security fix for CVE-2021-42715 and CVE-2021-42716 * Fri Oct 22 2021 Benjamin A. Beasley <code(a)musicinmybrain.net> 0-0.6 - Update to af1a5bc * Fri Oct 22 2021 Benjamin A. Beasley <code(a)musicinmybrain.net> 0-0.5 - Reduce macro indirection in the spec file -------------------------------------------------------------------------------- References: [ 1 ] Bug #2017908 - CVE-2021-42715 stb: DoS in stb_image HDR loader via a crafted file https://bugzilla.redhat.com/show_bug.cgi?id=2017908 [ 2 ] Bug #2017913 - CVE-2021-42716 stb: heap-based buffer overflow in stb_image PNM loader https://bugzilla.redhat.com/show_bug.cgi?id=2017913 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-0511a38484' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 33 Update: atomic-queue-0-0.6.20211022git7013a8b.fc33
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-500e763e43 2021-10-31 01:01:18.358994 -------------------------------------------------------------------------------- Name : atomic-queue Product : Fedora 33 Version : 0 Release : 0.6.20211022git7013a8b.fc33 URL : https://github.com/max0x7ba/atomic_queue Summary : C++ lockless queue Description : C++14 multiple-producer-multiple-consumer lockless queues based on circular buffer with std::atomic. The main design principle these queues follow is minimalism: the bare minimum of atomic operations, fixed size buffer, value semantics. These qualities are also limitations: �� The maximum queue size must be set at compile time or construction time. The circular buffer side-steps the memory reclamation problem inherent in linked-list based queues for the price of fixed buffer size. See Effective memory reclamation for lock-free data structures in C++ for more details. Fixed buffer size may not be that much of a limitation, since once the queue gets larger than the maximum expected size that indicates a problem that elements aren��t processed fast enough, and if the queue keeps growing it may eventually consume all available memory which may affect the entire system, rather than the problematic process only. The only apparent inconvenience is that one has to do an upfront back-of-the-envelope calculation on what would be the largest expected/acceptable queue size. �� There are no OS-blocking push/pop functions. This queue is designed for ultra-low-latency scenarios and using an OS blocking primitive would be sacrificing push-to-pop latency. For lowest possible latency one cannot afford blocking in the OS kernel because the wake-up latency of a blocked thread is about 1-3 microseconds, whereas this queue��s round-trip time can be as low as 150 nanoseconds. Ultra-low-latency applications need just that and nothing more. The minimalism pays off, see the throughput and latency benchmarks. Available containers are: �� AtomicQueue - a fixed size ring-buffer for atomic elements. �� OptimistAtomicQueue - a faster fixed size ring-buffer for atomic elements which busy-waits when empty or full. �� AtomicQueue2 - a fixed size ring-buffer for non-atomic elements. �� OptimistAtomicQueue2 - a faster fixed size ring-buffer for non-atomic elements which busy-waits when empty or full. These containers have corresponding AtomicQueueB, OptimistAtomicQueueB, AtomicQueueB2, OptimistAtomicQueueB2 versions where the buffer size is specified as an argument to the constructor. Totally ordered mode is supported. In this mode consumers receive messages in the same FIFO order the messages were posted. This mode is supported for push and pop functions, but for not the try_ versions. On Intel x86 the totally ordered mode has 0 cost, as of 2019. Single-producer-single-consumer mode is supported. In this mode, no read-modify-write instructions are necessary, only the atomic loads and stores. That improves queue throughput significantly. -------------------------------------------------------------------------------- Update Information: Add support for missing architectures (ppc64le, s390x) -------------------------------------------------------------------------------- ChangeLog: * Fri Oct 22 2021 Benjamin A. Beasley <code(a)musicinmybrain.net> 0-0.6 - Update to 7013a8b (support up to 256 byte cache lines) * Wed Oct 20 2021 Benjamin A. Beasley <code(a)musicinmybrain.net> 0-0.5 - Update to ee3d91c: fix RHBZ#1994598, fix RHBZ#1994599 * Tue Oct 19 2021 Benjamin A. Beasley <code(a)musicinmybrain.net> 0-0.4 - Update to commit dfd2cbe * Fri Sep 24 2021 Benjamin A. Beasley <code(a)musicinmybrain.net> 0-0.3 - We really don��t need to adjust the C++ standard for the tests -------------------------------------------------------------------------------- References: [ 1 ] Bug #1994598 - atomic-queue is ExclusiveArch with no support for s390x https://bugzilla.redhat.com/show_bug.cgi?id=1994598 [ 2 ] Bug #1994599 - atomic-queue is ExclusiveArch with no support for ppc64le https://bugzilla.redhat.com/show_bug.cgi?id=1994599 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-500e763e43' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 33 Update: rust-1.56.0-1.fc33
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-bc58c81f52 2021-10-31 01:01:18.358985 -------------------------------------------------------------------------------- Name : rust Product : Fedora 33 Version : 1.56.0 Release : 1.fc33 URL : https://www.rust-lang.org Summary : The Rust Programming Language Description : Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. This package includes the Rust compiler and documentation generator. -------------------------------------------------------------------------------- Update Information: Update to Rust 1.56.0: * Rust 2021 - Disjoint capture in closures - `IntoIterator` for arrays - Or patterns in macro-rules - Default Cargo feature resolver - Additions to the prelude - Panic macro consistency - Reserving syntax - Warnings promoted to errors * Cargo `rust-version` * New bindings in `binding @ pattern` * Stabilized APIs See the [blog post](https://blog.rust-lang.org/2021/10/21/Rust-1.56.0.html) and [release notes](https://github.com/rust- lang/rust/blob/master/RELEASES.md#version-1560-2021-10-21) for more details. -------------------------------------------------------------------------------- ChangeLog: * Thu Oct 21 2021 Josh Stone <jistone(a)redhat.com> - 1.56.0-1 - Update to 1.56.0. * Tue Sep 14 2021 Sahana Prasad <sahana(a)redhat.com> - 1.55.0-2 - Rebuilt with OpenSSL 3.0.0 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-bc58c81f52' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 33 Update: sameboy-0.14.6-1.fc33
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-cf4f3d838f 2021-10-31 01:01:18.358976 -------------------------------------------------------------------------------- Name : sameboy Product : Fedora 33 Version : 0.14.6 Release : 1.fc33 URL : https://github.com/LIJI32/SameBoy Summary : Game Boy and Game Boy Color emulator written in C Description : SameBoy is an open source Game Boy (DMG) and Game Boy Color (CGB) emulator, written in portable C. It has a native Cocoa front-end for MacOS, an SDL front-end for other operating systems, and a libretro core. It also includes a text-based debugger with expression evaluation. -------------------------------------------------------------------------------- Update Information: Update to 0.14.6 -------------------------------------------------------------------------------- ChangeLog: * Fri Oct 22 2021 Jan Dr��gehoff <sentrycraft123(a)gmail.com> - 0.14.6-1 - Update to 0.14.6 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-cf4f3d838f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 33 Update: virtualbox-guest-additions-6.1.28-1.fc33
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-a1d34bdf69 2021-10-31 01:01:18.358967 -------------------------------------------------------------------------------- Name : virtualbox-guest-additions Product : Fedora 33 Version : 6.1.28 Release : 1.fc33 URL : https://www.virtualbox.org/wiki/VirtualBox Summary : VirtualBox Guest Additions Description : VirtualBox is a powerful x86 and AMD64/Intel64 virtualization product for enterprise as well as home use. This package contains the VirtualBox Guest Additions which support better integration of VirtualBox guests with the Host, including file sharing, clipboard sharing and Seamless mode. -------------------------------------------------------------------------------- Update Information: Update Virtualbox Guest Additions to 6.1.28 (#2015655) -------------------------------------------------------------------------------- ChangeLog: * Fri Oct 22 2021 S��rgio Basto <sergio(a)serjux.com> - 6.1.28-1 - Update Virtualbox Guest Additions to 6.1.28 (#2015655) -------------------------------------------------------------------------------- References: [ 1 ] Bug #2015655 - virtualbox-guest-additions-6.1.28 is available https://bugzilla.redhat.com/show_bug.cgi?id=2015655 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-a1d34bdf69' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 33 Update: perl-Compress-Stream-Zstd-0.202-3.fc33
by updates＠fedoraproject.org 31 Oct '21

31 Oct '21

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2021-97c0c0dae1 2021-10-31 01:01:18.358958 -------------------------------------------------------------------------------- Name : perl-Compress-Stream-Zstd Product : Fedora 33 Version : 0.202 Release : 3.fc33 URL : https://metacpan.org/release/Compress-Stream-Zstd/ Summary : Perl interface to the Zstd (Zstandard) (de)compressor Description : The Compress::Stream::Zstd module provides an interface to the Zstd (de)compressor. -------------------------------------------------------------------------------- Update Information: Initial package -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- References: [ 1 ] Bug #2011825 - Review Request: perl-Compress-Stream-Zstd - Perl interface to the Zstd (Zstandard) (de)compressor https://bugzilla.redhat.com/show_bug.cgi?id=2011825 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2021-97c0c0dae1' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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package-announce October 2021