https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Bug ID: 1280485 Summary: Review Request: python-PyMVPA Product: Fedora Version: rawhide Component: Package Review Severity: medium Priority: medium Assignee: nobody@fedoraproject.org Reporter: i.gnatenko.brain@gmail.com QA Contact: extras-qa@fedoraproject.org CC: package-review@lists.fedoraproject.org
Spec URL: https://ignatenkobrain.fedorapeople.org/neurofedora/python-PyMVPA.spec SRPM URL: https://ignatenkobrain.fedorapeople.org/neurofedora/python-PyMVPA-2.4.0-3.fc... Description: PyMVPA is a Python package intended to ease statistical learning analyses of large datasets. It offers an extensible framework with a high-level interface to a broad range of algorithms for classification, regression, feature selection, data import and export. It is designed to integrate well with related software packages, such as scikit-learn, shogun, MDP, etc. While it is not limited to the neuroimaging domain, it is eminently suited for such datasets. PyMVPA is free software and requires nothing but free-software to run.
PyMVPA stands for MultiVariate Pattern Analysis (MVPA) in Python. Fedora Account System Username: ignatenkobrain
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Igor Gnatenko i.gnatenko.brain@gmail.com changed:
What |Removed |Added ---------------------------------------------------------------------------- Summary|Review Request: |Review Request: |python-PyMVPA |python-PyMVPA - | |Multivariate pattern | |analysis
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Igor Gnatenko i.gnatenko.brain@gmail.com changed:
What |Removed |Added ---------------------------------------------------------------------------- Blocks| |1276941 (fedora-neuro) Depends On| |1276871 (python-nibabel), | |1278685 (python-pywt) Alias| |python-PyMVPA
Referenced Bugs:
https://bugzilla.redhat.com/show_bug.cgi?id=1276871 [Bug 1276871] Review Request: python-nibabel - Python package to access a cacophony of neuro-imaging file formats https://bugzilla.redhat.com/show_bug.cgi?id=1276941 [Bug 1276941] Fedora NeuroImaging and NeuroScience tracking bug https://bugzilla.redhat.com/show_bug.cgi?id=1278685 [Bug 1278685] Review Request: python-pywt - PyWavelets, wavelet transform module
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Zbigniew Jędrzejewski-Szmek zbyszek@in.waw.pl changed:
What |Removed |Added ---------------------------------------------------------------------------- Status|NEW |ASSIGNED CC| |zbyszek@in.waw.pl Assignee|nobody@fedoraproject.org |zbyszek@in.waw.pl Flags| |fedora-review?
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Zbigniew Jędrzejewski-Szmek zbyszek@in.waw.pl changed:
What |Removed |Added ---------------------------------------------------------------------------- Depends On| |1265670
Referenced Bugs:
https://bugzilla.redhat.com/show_bug.cgi?id=1265670 [Bug 1265670] shogun: FTBFS in rawhide
https://bugzilla.redhat.com/show_bug.cgi?id=1280485 Bug 1280485 depends on bug 1276871, which changed state.
Bug 1276871 Summary: Review Request: python-nibabel - Python package to access a cacophony of neuro-imaging file formats https://bugzilla.redhat.com/show_bug.cgi?id=1276871
What |Removed |Added ---------------------------------------------------------------------------- Status|ON_QA |CLOSED Resolution|--- |ERRATA
https://bugzilla.redhat.com/show_bug.cgi?id=1280485 Bug 1280485 depends on bug 1265670, which changed state.
Bug 1265670 Summary: shogun: FTBFS in rawhide https://bugzilla.redhat.com/show_bug.cgi?id=1265670
What |Removed |Added ---------------------------------------------------------------------------- Status|ASSIGNED |CLOSED Resolution|--- |RAWHIDE
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Björn "besser82" Esser fedora@besser82.io changed:
What |Removed |Added ---------------------------------------------------------------------------- CC| |fedora@besser82.io
--- Comment #1 from Björn "besser82" Esser fedora@besser82.io --- besser82's shogun-4.0.1-0.4.git20150913.d8eb73d.fc24 completed http://koji.fedoraproject.org/koji/buildinfo?buildID=704166
* * *
FYI
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Igor Gnatenko i.gnatenko.brain@gmail.com changed:
What |Removed |Added ---------------------------------------------------------------------------- Flags| |needinfo?(zbyszek@in.waw.pl | |)
--- Comment #2 from Igor Gnatenko i.gnatenko.brain@gmail.com --- Can you do review because shogun fixed and other packages in place? ;)
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Zbigniew Jędrzejewski-Szmek zbyszek@in.waw.pl changed:
What |Removed |Added ---------------------------------------------------------------------------- Flags|needinfo?(zbyszek@in.waw.pl | |) |
--- Comment #3 from Zbigniew Jędrzejewski-Szmek zbyszek@in.waw.pl --- Yes, I'll probably do a round of review work this weekend.
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
--- Comment #4 from Zbigniew Jędrzejewski-Szmek zbyszek@in.waw.pl --- - name should be lowercase - xvfb-run should be used with "-a" (automatically select free display number) - #!/usr/bin/env /usr/bin/pythonX should be replaced with #!/usr/bin/pythonX
Now the usual question: are executables for both python versions wanted? * pymvpa2 has support for loading python code with --preload, so yes * pymvpa2-prep-afni-surf just calls a function to preprocess some data, so no * pymvpa2-prep-fmri likewise no * pymvpa2-tutorial starts an IPython interactive session, so yes
- so please package just one version for the two executables which don't need two - Recommends is used for various python modules which are imported. This doesn't seem right, the should be Require-d, since those executables simply don't work without them.
Maybe pymvpa2-tutorial should be split out in a separate subpackage with Requires: python3-ipython.
It would be great to get the tests to pass, that's pretty much the best way to test code compatibility.
Build fails here with: File not found: /builddir/build/BUILDROOT/python-PyMVPA-2.4.0-3.fc24.x86_64/usr/lib64/python2.7/site-packages/pymvpa2*-egginfo
https://bugzilla.redhat.com/show_bug.cgi?id=1280485 Bug 1280485 depends on bug 1278685, which changed state.
Bug 1278685 Summary: Review Request: python-pywt - PyWavelets, wavelet transform module https://bugzilla.redhat.com/show_bug.cgi?id=1278685
What |Removed |Added ---------------------------------------------------------------------------- Status|ON_QA |CLOSED Resolution|--- |ERRATA
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
--- Comment #5 from Zbigniew Jędrzejewski-Szmek zbyszek@in.waw.pl --- ?
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Ankur Sinha (FranciscoD) sanjay.ankur@gmail.com changed:
What |Removed |Added ---------------------------------------------------------------------------- CC| |sanjay.ankur@gmail.com Flags| |needinfo?(i.gnatenko.brain@ | |gmail.com)
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Igor Gnatenko i.gnatenko.brain@gmail.com changed:
What |Removed |Added ---------------------------------------------------------------------------- Status|ASSIGNED |CLOSED Resolution|--- |WONTFIX Flags|needinfo?(i.gnatenko.brain@ | |gmail.com) | Last Closed| |2018-08-22 03:31:10
--- Comment #6 from Igor Gnatenko i.gnatenko.brain@gmail.com --- Unfortunately I don't have time to work on these review requests anymore, sorry.
https://bugzilla.redhat.com/show_bug.cgi?id=1280485
Ankur Sinha (FranciscoD) sanjay.ankur@gmail.com changed:
What |Removed |Added ---------------------------------------------------------------------------- Blocks| |201449 (FE-DEADREVIEW)
Referenced Bugs:
https://bugzilla.redhat.com/show_bug.cgi?id=201449 [Bug 201449] FE-DEADREVIEW -- Reviews stalled due to lack of submitter response should be blocking this bug.
package-review@lists.fedoraproject.org