[Bug 2175182] New: Review Request: python-intern - Python SDK for interacting with neuroscience data via the Boss API
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
Bug ID: 2175182 Summary: Review Request: python-intern - Python SDK for interacting with neuroscience data via the Boss API Product: Fedora Version: rawhide Hardware: All OS: Linux Status: NEW Component: Package Review Severity: medium Priority: medium Assignee: nobody@fedoraproject.org Reporter: code@musicinmybrain.net QA Contact: extras-qa@fedoraproject.org CC: package-review@lists.fedoraproject.org Target Milestone: --- Classification: Fedora
Spec URL: https://music.fedorapeople.org/python-intern-1.4.0-1.fc37.src.rpm SRPM URL: https://music.fedorapeople.org/python-intern.spec Description:
intern (Integrated Toolkit for Extensible and Reproducible Neuroscience) is a Python 3 module that enables big-data neuroscience. Currently, it provides an interface to common big-data neuroimaging databases such as BossDB, CloudVolume, DVID, and other standard formats.
Fedora Account System Username: music
Koji scratch builds: F39: https://koji.fedoraproject.org/koji/taskinfo?taskID=98238244 F38: https://koji.fedoraproject.org/koji/taskinfo?taskID=98238320 F37: https://koji.fedoraproject.org/koji/taskinfo?taskID=98238333 F36: https://koji.fedoraproject.org/koji/taskinfo?taskID=98238335
The above are forced to build on all architectures for testing, e.g.,
$ koji build --scratch f39 --arch_override='x86_64 i686 ppc64le aarch64 s390x' python-intern-1.4.0-1.fc37.src.rpm
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
Ben Beasley code@musicinmybrain.net changed:
What |Removed |Added ---------------------------------------------------------------------------- Blocks| |1276941 (fedora-neuro) Doc Type|--- |If docs needed, set a value
Referenced Bugs:
https://bugzilla.redhat.com/show_bug.cgi?id=1276941 [Bug 1276941] Fedora NeuroImaging and NeuroScience tracking bug
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
Jakub Kadlčík jkadlcik@redhat.com changed:
What |Removed |Added ---------------------------------------------------------------------------- URL| |https://github.com/jhuapl-b | |oss/intern
--- Comment #1 from Jakub Kadlčík jkadlcik@redhat.com --- Copr build: https://copr.fedorainfracloud.org/coprs/build/5589703 (succeeded)
Review template: https://download.copr.fedorainfracloud.org/results/@fedora-review/fedora-rev...
Please take a look if any issues were found.
--- This comment was created by the fedora-review-service https://github.com/FrostyX/fedora-review-service
If you want to trigger a new Copr build, add a comment containing new Spec and SRPM URLs or [fedora-review-service-build] string.
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
Ankur Sinha (FranciscoD) sanjay.ankur@gmail.com changed:
What |Removed |Added ---------------------------------------------------------------------------- CC| |sanjay.ankur@gmail.com Status|NEW |ASSIGNED Flags| |fedora-review?
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
Ankur Sinha (FranciscoD) sanjay.ankur@gmail.com changed:
What |Removed |Added ---------------------------------------------------------------------------- Flags|fedora-review? |fedora-review+ Status|ASSIGNED |POST
--- Comment #2 from Ankur Sinha (FranciscoD) sanjay.ankur@gmail.com --- LGTM XXX APPROVED XXX
- Upstream released a new tag with your PR and a couple of fixes, so worth updating to that after import: https://github.com/jhuapl-boss/intern/compare/v1.4.0...v1.4.1
Package Review ==============
Legend: [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated [ ] = Manual review needed
===== MUST items =====
Generic: [x]: Package is licensed with an open-source compatible license and meets other legal requirements as defined in the legal section of Packaging Guidelines. [x]: License field in the package spec file matches the actual license. Note: Checking patched sources after %prep for licenses. Licenses found: "Unknown or generated", "*No copyright* Apache License 2.0", "Apache License 2.0". 63 files have unknown license. Detailed output of licensecheck in /home/asinha/dump/fedora-reviews/2175182-python- intern/licensecheck.txt [x]: License file installed when any subpackage combination is installed. [x]: Package contains no bundled libraries without FPC exception. [x]: Changelog in prescribed format. [x]: Sources contain only permissible code or content. [-]: Package contains desktop file if it is a GUI application. [-]: Development files must be in a -devel package [x]: Package uses nothing in %doc for runtime. [x]: Package consistently uses macros (instead of hard-coded directory names). [x]: Package is named according to the Package Naming Guidelines. [x]: Package does not generate any conflict. [x]: Package obeys FHS, except libexecdir and /usr/target. [-]: If the package is a rename of another package, proper Obsoletes and Provides are present. [x]: Requires correct, justified where necessary. [x]: Spec file is legible and written in American English. [-]: Package contains systemd file(s) if in need. [x]: Package is not known to require an ExcludeArch tag. [x]: Package complies to the Packaging Guidelines [x]: Package successfully compiles and builds into binary rpms on at least one supported primary architecture. [x]: Package installs properly. [x]: Rpmlint is run on all rpms the build produces. Note: There are rpmlint messages (see attachment). ^ Messages are OK
[x]: If (and only if) the source package includes the text of the license(s) in its own file, then that file, containing the text of the license(s) for the package is included in %license. [x]: Package requires other packages for directories it uses. [x]: Package must own all directories that it creates. [x]: Package does not own files or directories owned by other packages. [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the beginning of %install. [x]: Macros in Summary, %description expandable at SRPM build time. [x]: Dist tag is present. [x]: Package does not contain duplicates in %files. [x]: Permissions on files are set properly. [x]: Package must not depend on deprecated() packages. [x]: Package use %makeinstall only when make install DESTDIR=... doesn't work. [x]: Package is named using only allowed ASCII characters. [x]: Package does not use a name that already exists. [x]: Package is not relocatable. [x]: Sources used to build the package match the upstream source, as provided in the spec URL. [x]: Spec file name must match the spec package %{name}, in the format %{name}.spec. [x]: File names are valid UTF-8. [x]: Large documentation must go in a -doc subpackage. Large could be size (~1MB) or number of files. Note: Documentation size is 0 bytes in 0 files. [x]: Packages must not store files under /srv, /opt or /usr/local
Python: [x]: Python eggs must not download any dependencies during the build process. [x]: A package which is used by another package via an egg interface should provide egg info. [x]: Package meets the Packaging Guidelines::Python [x]: Package contains BR: python2-devel or python3-devel [x]: Packages MUST NOT have dependencies (either build-time or runtime) on packages named with the unversioned python- prefix unless no properly versioned package exists. Dependencies on Python packages instead MUST use names beginning with python2- or python3- as appropriate. [x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files [x]: Binary eggs must be removed in %prep
===== SHOULD items =====
Generic: [-]: If the source package does not include license text(s) as a separate file from upstream, the packager SHOULD query upstream to include it. [x]: Final provides and requires are sane (see attachments). [x]: Fully versioned dependency in subpackages if applicable. Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in python3-intern [x]: Package functions as described. ^ Tests pass [?]: Latest version is packaged. I see they released 1.4.1 last week (merging your PR). So worth updating to this before building, or you'll get an immediate notification from release-monitoring.org :)
[x]: Package does not include license text files separate from upstream. [x]: Patches link to upstream bugs/comments/lists or are otherwise justified. [-]: Sources are verified with gpgverify first in %prep if upstream publishes signatures. Note: gpgverify is not used. [x]: Package should compile and build into binary rpms on all supported architectures. [x]: %check is present and all tests pass. [x]: Packages should try to preserve timestamps of original installed files. [x]: Reviewer should test that the package builds in mock. [x]: Buildroot is not present [x]: Package has no %clean section with rm -rf %{buildroot} (or $RPM_BUILD_ROOT) [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin. [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file [x]: Sources can be downloaded from URI in Source: tag [x]: SourceX is a working URL. [x]: Spec use %global instead of %define unless justified.
===== EXTRA items =====
Generic: [x]: Rpmlint is run on all installed packages. Note: There are rpmlint messages (see attachment). [x]: Spec file according to URL is the same as in SRPM.
Rpmlint ------- Checking: python3-intern-1.4.0-1.fc39.noarch.rpm python-intern-doc-1.4.0-1.fc39.noarch.rpm python-intern-1.4.0-1.fc39.src.rpm =========================================================================== rpmlint session starts ========================================================================== rpmlint: 2.4.0 configuration: /usr/lib/python3.11/site-packages/rpmlint/configdefaults.toml /etc/xdg/rpmlint/fedora-legacy-licenses.toml /etc/xdg/rpmlint/fedora-spdx-licenses.toml /etc/xdg/rpmlint/fedora.toml /etc/xdg/rpmlint/scoring.toml /etc/xdg/rpmlint/users-groups.toml /etc/xdg/rpmlint/warn-on-functions.toml rpmlintrc: [PosixPath('/tmp/tmpsjz4n2yn')] checks: 31, packages: 3
python3-intern.noarch: W: no-documentation python3-intern.noarch: W: files-duplicate /usr/lib/python3.11/site-packages/intern/service/boss/tests/__init__.py /usr/lib/python3.11/site-packages/intern/remote/boss/tests/__init__.py ============================================ 3 packages and 0 specfiles checked; 0 errors, 2 warnings, 0 badness; has taken 1.4 s ===========================================
Rpmlint (installed packages) ---------------------------- ============================ rpmlint session starts ============================ rpmlint: 2.4.0 configuration: /usr/lib/python3.11/site-packages/rpmlint/configdefaults.toml /etc/xdg/rpmlint/fedora-legacy-licenses.toml /etc/xdg/rpmlint/fedora-spdx-licenses.toml /etc/xdg/rpmlint/fedora.toml /etc/xdg/rpmlint/scoring.toml /etc/xdg/rpmlint/users-groups.toml /etc/xdg/rpmlint/warn-on-functions.toml checks: 31, packages: 2
python3-intern.noarch: W: no-documentation python3-intern.noarch: W: files-duplicate /usr/lib/python3.11/site-packages/intern/service/boss/tests/__init__.py /usr/lib/python3.11/site-packages/intern/remote/boss/tests/__init__.py 2 packages and 0 specfiles checked; 0 errors, 2 warnings, 0 badness; has taken 0.2 s
Source checksums ---------------- https://files.pythonhosted.org/packages/source/i/intern/intern-1.4.0.tar.gz : CHECKSUM(SHA256) this package : bbe2b387ba994f5fd2fadf60cf5a7b125d287832b6e28081eb638d7895002395 CHECKSUM(SHA256) upstream package : bbe2b387ba994f5fd2fadf60cf5a7b125d287832b6e28081eb638d7895002395
Requires -------- python3-intern (rpmlib, GLIBC filtered): python(abi) python3.11dist(blosc) python3.11dist(joblib) python3.11dist(nose2) python3.11dist(numpy) python3.11dist(pillow) python3.11dist(psutil) python3.11dist(requests) python3.11dist(six) python3.11dist(tqdm)
python-intern-doc (rpmlib, GLIBC filtered):
Provides -------- python3-intern: python-intern python3-intern python3.11-intern python3.11dist(intern) python3dist(intern)
python-intern-doc: python-intern-doc
Generated by fedora-review 0.9.0 (6761b6c) last change: 2022-08-23 Command line :/usr/bin/fedora-review -b 2175182 Buildroot used: fedora-rawhide-x86_64 Active plugins: Generic, Python, Shell-api Disabled plugins: Ocaml, Haskell, C/C++, SugarActivity, R, fonts, PHP, Java, Perl Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
Ben Beasley code@musicinmybrain.net changed:
What |Removed |Added ---------------------------------------------------------------------------- Status|POST |ASSIGNED
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
Ben Beasley code@musicinmybrain.net changed:
What |Removed |Added ---------------------------------------------------------------------------- Assignee|nobody@fedoraproject.org |sanjay.ankur@gmail.com
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #3 from Fedora Admin user for bugzilla script actions fedora-admin-xmlrpc@fedoraproject.org --- The Pagure repository was created at https://src.fedoraproject.org/rpms/python-intern
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
Fedora Update System updates@fedoraproject.org changed:
What |Removed |Added ---------------------------------------------------------------------------- Status|ASSIGNED |MODIFIED
--- Comment #4 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-b92a00563c has been submitted as an update to Fedora 39. https://bodhi.fedoraproject.org/updates/FEDORA-2023-b92a00563c
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
Fedora Update System updates@fedoraproject.org changed:
What |Removed |Added ---------------------------------------------------------------------------- Status|MODIFIED |CLOSED Resolution|--- |ERRATA Last Closed| |2023-03-13 18:46:42
--- Comment #5 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-b92a00563c has been pushed to the Fedora 39 stable repository. If problem still persists, please make note of it in this bug report.
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #6 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-9c368c1c9e has been submitted as an update to Fedora 38. https://bodhi.fedoraproject.org/updates/FEDORA-2023-9c368c1c9e
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #7 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-c6b9740f42 has been submitted as an update to Fedora 37. https://bodhi.fedoraproject.org/updates/FEDORA-2023-c6b9740f42
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #8 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-48ddb6cd6c has been submitted as an update to Fedora 36. https://bodhi.fedoraproject.org/updates/FEDORA-2023-48ddb6cd6c
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #9 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-c6b9740f42 has been pushed to the Fedora 37 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --refresh --advisory=FEDORA-2023-c6b9740f42 *` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2023-c6b9740f42
See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #10 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-9c368c1c9e has been pushed to the Fedora 38 testing repository.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2023-9c368c1c9e
See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #11 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-48ddb6cd6c has been pushed to the Fedora 36 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --refresh --advisory=FEDORA-2023-48ddb6cd6c *` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2023-48ddb6cd6c
See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #12 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-9c368c1c9e has been pushed to the Fedora 38 stable repository. If problem still persists, please make note of it in this bug report.
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #13 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-48ddb6cd6c has been pushed to the Fedora 36 stable repository. If problem still persists, please make note of it in this bug report.
https://bugzilla.redhat.com/show_bug.cgi?id=2175182
--- Comment #14 from Fedora Update System updates@fedoraproject.org --- FEDORA-2023-c6b9740f42 has been pushed to the Fedora 37 stable repository. If problem still persists, please make note of it in this bug report.
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