collaborating on ggplot2 ?
by Jack Tanner
Howdy,
I'd like to get the ggplot2 library package-able. I cannot sign up as a
maintainer, but I can work on spec files. ggplot2 has a whole bunch of
dependencies:
According to http://cran.r-project.org/web/packages/ggplot2/ ,
Imports: reshape
<http://cran.r-project.org/web/packages/reshape/index.html> (≥ 0.8.0),
plyr <http://cran.r-project.org/web/packages/plyr/index.html> (≥ 0.1.6),
splines, MASS <http://cran.r-project.org/web/packages/VR/index.html>,
RColorBrewer
<http://cran.r-project.org/web/packages/RColorBrewer/index.html>, grid,
proto <http://cran.r-project.org/web/packages/proto/index.html>
Suggests: quantreg
<http://cran.r-project.org/web/packages/quantreg/index.html>, Hmisc
<http://cran.r-project.org/web/packages/Hmisc/index.html>, mapproj
<http://cran.r-project.org/web/packages/mapproj/index.html>, maps
<http://cran.r-project.org/web/packages/maps/index.html>, digest
<http://cran.r-project.org/web/packages/digest/index.html>, colorspace
<http://cran.r-project.org/web/packages/colorspace/index.html>, hexbin
<http://cran.r-project.org/web/packages/hexbin/index.html>, gpclib
<http://cran.r-project.org/web/packages/gpclib/index.html>, maptools
<http://cran.r-project.org/web/packages/maptools/index.html>
Would anyone be interested in taking this on with me and writing spec
files for some of the ggplot2 prereqs?
14 years
Re: [Fedora-r-devel-list] R 2.9.2 updates are ready
by Martyn Plummer
Up until now we have been building our own R RPMS for EL4 and EL5 for
distribution via CRAN. To be precise, Bob Kinney at Harvard (cc'ed) has
been building them. Lately I stepped in to rebuild the 32-bit EL4/5 RPMS
using mock.
With R 2.9.1 and R 2.9.2 you have built EPEL RPMS for R at the same time
as the Fedora ones. Does this mean we can give up building our own?
Is it OK for me to grab the EPEL RPMS and put them on CRAN before they
get pushed to stable?
Thanks
Martyn
On Tue, 2009-08-25 at 11:27 -0400, Tom "spot" Callaway wrote:
> Fedora 10:
> https://admin.fedoraproject.org/updates/rpy-1.0.3-10.fc10,R-2.9.2-1.fc10
> Fedora 11:
> https://admin.fedoraproject.org/updates/rpy-2.0.3-4.fc11,R-2.9.2-1.fc11
>
> (Note: EPEL updates sit in testing for two weeks, or until enough people
> give them positive karma to push to stable)
> EL-4: https://admin.fedoraproject.org/updates/R-2.9.2-1.el4
> EL-5: https://admin.fedoraproject.org/updates/R-2.9.2-1.el5
>
> ~spot
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14 years, 1 month
small issue with yum-presto and R update (config files changed)
by José Abílio Matos
While updating to R-2.9.2 I noticed the following in yum:
Downloading Packages:
Setting up and reading Presto delta metadata
updates-testing/prestodelta | 111 kB 00:00
updates/prestodelta | 487 kB 00:01
Processing delta metadata
/usr/lib/R/etc/Makeconf: contents have been changed
/usr/lib/R/etc/ldpaths: contents have been changed
/usr/share/doc/R-2.9.1/html/search/index.txt: contents have been changed
delta does not match installed data
FWIW I did not change those files other than updating other R packages trough
yum.
I remember to have the same problem ever since I have installed yum-
presto when updating R.
Is it possible to solve this in the spec file? Should I report this to
bugzilla?
Regards,
--
José Abílio
14 years, 1 month
RMySQL spec file
by Jack Tanner
Hi, here's a spec file in case anyone wants to package up RMySQL. I'm
hereby placing it in the public domain, so please modify as necessary,
and don't even bother giving me credit. I'm not volunteering to be a
maintainer myself.
It passes rpmlint, it's tested only on CentOS 5, and it works for me.
YMMV. I'm somewhat unsure about the BuildRequires.
By the way, R2spec was a really good starting point, but I had to
deviate from its suggestions in a couple of places. You could diff an
R2spec-generated file and the one below if you're curious.
-- CUT HERE --
%global packname RMySQL
%global packrel 1
Name: R-%{packname}
Version: 0.7
Release: 4%{?dist}
Summary: R interface to the MySQL database
Group: Applications/Engineering
License: GPLv2
URL: http://cran.r-project.org/web/packages/RMySQL/
Source0:
ftp://cran.r-project.org/pub/R/contrib/main/%{packname}_%{version}-%{rele...
BuildRoot:
%{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
Requires(post): R
Requires(postun): R
BuildRequires: R-devel tetex-latex R >= R-2.8.0 R-methods R-DBI >=
R-0.2-2 R-utils mysql-devel
%description
Database interface and MySQL driver for R. This version complies with
the database interface definition as implemented in the package DBI 0.2-2.
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{_libdir}/R/library
%{_bindir}/R CMD INSTALL -l %{buildroot}%{_libdir}/R/library %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_libdir}/R/library/R.css
%check
%{_bindir}/R CMD check %{packname}
%clean
rm -rf %{buildroot}
%post
%{_R_make_search_index}
%postun
%{_R_make_search_index}
%files
%defattr(-, root, root, -)
%dir %{_libdir}/R/library/%{packname}
%doc %{_libdir}/R/library/%{packname}/latex
%doc %{_libdir}/R/library/%{packname}/doc
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/man
%doc %{_libdir}/R/library/%{packname}/NEWS
%doc %{_libdir}/R/library/%{packname}/GPL
%doc %{_libdir}/R/library/%{packname}/GPL
%doc %{_libdir}/R/library/%{packname}/INSTALL
%doc %{_libdir}/R/library/%{packname}/INSTALL.win
%doc %{_libdir}/R/library/%{packname}/README
%doc %{_libdir}/R/library/%{packname}/README.windows
%doc %{_libdir}/R/library/%{packname}/THANKS
%doc %{_libdir}/R/library/%{packname}/TODO
%doc %{_libdir}/R/library/%{packname}/WindowsPath.txt
%doc %{_libdir}/R/library/%{packname}/newFunctionNames.txt
%{_libdir}/R/library/%{packname}/CONTENTS
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/R
%{_libdir}/R/library/%{packname}/R-ex
%{_libdir}/R/library/%{packname}/help
%{_libdir}/R/library/%{packname}/FindMySQLhome.R
%{_libdir}/R/library/%{packname}/libs/RMySQL.so
%changelog
* Sun Aug 23 2009 Name <Mail> 0.7.4-1
- initial package for Fedora
14 years, 1 month
R2spec v2.5.3
by Pierre-Yves Chibon
Dear list,
As just announced on my blog I released a new version of R2spec and
there is the changelog for this version:
Version 2.5.3 -- 02nd Aug 2009
- Features added
* Prints warning if summary is empty
* Prints warning if description is empty
* Add support for r-forge.net (option --rforge)
* Add support for r-forge.r-project.org (option --rproject)
* Add the prefix R- to the list of dependencies with a list of package
to ignore (ie: R)
* Add a default source0 and url if the bioconductor release is not set
- Bugs correction
* Does not add the 'Requires:' to the spec if they are empty
* Changes the '-' into '.' if the version of the R library contains
any '-'
Package is available for F-10, F-11, rawhide, EPEL-4 and EPEL-5.
Feel free to add some karma if you test it :)
Thanks,
Best regards,
Pierre
14 years, 1 month
