hi,
In an effort to help the biolinux community www.biolinux.org , I put at your disposition R-BioC for R 2.5.x for fedora core 6. Comments for improvement will be welcome. It is not an official fedora rpm because fedora plans to support only R. Unfortunatly is the only fc6 rpm for now but they are more for previous fc It works well, and it contains 102 very usefull sources: abind adSplit affxparser affy affycomp affydata affyio affylmGUI affypdnn affyPLM annaffy annotate arrayMagic Biobase bioDist Biostrings Bolstad BufferedMatrix BufferedMatrixMethods Category cMAP cyp450cdf DBI DynDoc ellipse gcrma genefilter GeneMeta geneplotter GeneR GGtools globaltest GO GOstats goTools gp53cdf gpls graph hgfocus hgfocuscdf hgfocusprobe hgu133a hgu133acdf hgu133aprobe hgu95av2 hgu95av2cdf hgu95av2probe Icens IDPmisc impute KEGG limma limmaGUI maanova makecdfenv marray matchprobes Matrix mgu74av2 mgu74av2cdf mgu74av2probe multtest pamr PFAM pvclust R2HTML RankProd RBGL R-BioC.sh R.cache RColorBrewer RCurl Rdbi RdbiPgSQL reposTools Rgraphviz R.huge RMySQL ROC R.oo RSPerl RSPython RSQLite RSvgDevice RSVGTipsDevice RUnit R.utils samr scatterplot3d siggenes sma som SparseM statmod tkrplot tkWidgets VR vsn widgetTools XML xtable YEAST
Best regards and good work.
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On Wed, 2007-12-05 at 19:47 -0800, D.Enrique ESCOBAR ESPINOZA wrote:
hi,
In an effort to help the biolinux community www.biolinux.org , I put at your disposition R-BioC for R 2.5.x for fedora core 6. Comments for improvement will be welcome. It is not an official fedora rpm because fedora plans to support only R. Unfortunatly is the only fc6 rpm for now but they are more for previous fc It works well, and it contains 102 very usefull sources:
Instead of doing it like you've done, which is a massive overload on the package, it would be much better to package all of these items individually.
For example, Fedora already has R-abind.
I know that we have some active efforts in progress to package up all of the BioConductor RPMS, anyone want to chime in with a status report?
~spot
Tom "spot" Callaway wrote:
On Wed, 2007-12-05 at 19:47 -0800, D.Enrique ESCOBAR ESPINOZA wrote:
hi,
In an effort to help the biolinux community www.biolinux.org , I put at your disposition R-BioC for R 2.5.x for fedora core 6. Comments for improvement will be welcome. It is not an official fedora rpm because fedora plans to support only R. Unfortunatly is the only fc6 rpm for now but they are more for previous fc
For example, Fedora already has R-abind.
I know that we have some active efforts in progress to package up all of the BioConductor RPMS, anyone want to chime in with a status report?
Hi
Fedora supports only R ? Below is an output of my yum list R-*
They are not all on the fedora repo yet, but there is several review in progress and more to come.
You can see them all there http://pingoured.fr/public/fedora/SPECS/ available for Fedora 7 and Fedora 8 in i386 and x86_64.
Would you like to be involved in this project (getting bioconductor on Fedora) ?
Regards, Pierre ~pingou
Installed Packages R.x86_64 2.6.1-1.fc8 installed R-ACME.x86_64 1.5.0-1.fc8 installed R-ALL.noarch 1.4.3-1.fc8 installed R-AnnotationDbi.noarch 1.1.6-1.fc8 installed R-BSgenome.noarch 1.7.0-1.fc8 installed R-BSgenome.Celegans.UCSC.ce2.noarch 1.2.0-3.fc8 installed R-BSgenome.Dmelanogaster.FlyBase.r51.noa 1.2.0-2.fc8 installed R-Biobase.x86_64 1.17.3-1.fc8 installed R-Biostrings.x86_64 2.7.2-1.fc8 installed R-BufferedMatrix.x86_64 1.3.0-1.fc8 installed R-BufferedMatrix-devel.x86_64 1.3.0-1.fc8 installed R-DBI.noarch 0.2-1.fc8 installed R-DynDoc.noarch 1.17.0-1.fc8 installed R-GO.noarch 2.0.1-1.fc8 installed R-KEGG.noarch 2.0.1-1.fc8 installed R-R2HTML.noarch 1.58-1.fc8 installed R-RColorBrewer.noarch 1.0-1.fc8 installed R-RSQLite.x86_64 0.5-1.fc8 installed R-RScaLAPACK.x86_64 0.5.1-10.fc8.1 installed R-RUnit.noarch 0.4.17-1.fc8 installed R-Rgraphviz.x86_64 1.17.7-1.fc8 installed R-SparseM.x86_64 0.74-1.fc8 installed R-XML.x86_64 1.9-1.fc8 installed R-abind.noarch 1.1-1.fc8 installed R-acepack.x86_64 1.3-2.fc8.1 installed R-affy.x86_64 1.17.2-2.fc8 installed R-affyPLM.x86_64 1.15.0-1.fc8 installed R-affyQCReport.noarch 1.17.0-1.fc8 installed R-affydata.noarch 1.11.2-1.fc8 installed R-affyio.x86_64 1.7.2-1.fc8 installed R-annaffy.noarch 1.11.0-1.fc8 installed R-annotate.noarch 1.17.1-3.fc8 installed R-devel.x86_64 2.6.1-1.fc8 installed R-fibroEset.noarch 1.4.2-1.fc8 installed R-gcrma.x86_64 2.11.0-1.fc8 installed R-genefilter.x86_64 1.17.2-1.fc8 installed R-geneplotter.noarch 1.17.0-1.fc8 installed R-graph.x86_64 1.17.10-1.fc8 installed R-hdf5.x86_64 1.6.6-2.fc8 installed R-hgu133a.noarch 1.16.0-1.fc8 installed R-hgu133acdf.noarch 1.16.0-1.fc8 installed R-hgu95aprobe.noarch 1.16.4-1.fc8 installed R-hgu95av2.noarch 1.16.0-1.fc8 installed R-hgu95av2.db.noarch 2.0.2-1.fc8 installed R-hgu95av2cdf.noarch 1.16.0-1.fc8 installed R-hgu95av2probe.noarch 1.16.3-2.fc8 installed R-hsahomology.noarch 1.16.0-1.fc8 installed R-hu6800.noarch 1.16.0-1.fc8 installed R-hu6800cdf.noarch 1.16.0-1.fc8 installed R-hu6800probe.noarch 1.16.2-1.fc8 installed R-limma.noarch 2.13.1-1.fc8 installed R-mAr.x86_64 1.1-11.fc8 installed R-maanova.x86_64 1.4.0-3.fc8 installed R-matchprobes.x86_64 1.11.0-1.fc8 installed R-multcomp.noarch 0.992-3.fc8 installed R-multtest.x86_64 1.19.0-1.fc8 installed R-mvtnorm.x86_64 0.8-3.fc8 installed R-pls.noarch 2.0-4.fc8 installed R-preprocessCore.x86_64 1.1.0-2.fc8 installed R-preprocessCore-devel.x86_64 1.1.0-2.fc8 installed R-qvalue.noarch 1.13.0-1.fc8 installed R-rae230a.noarch 1.16.0-2.fc8 installed R-rae230aprobe.noarch 1.16.2-2.fc8 installed R-randomForest.x86_64 4.5-1.fc8 installed R-rlecuyer.x86_64 0.1-3.fc8 installed R-siggenes.noarch 1.13.0-1.fc8 installed R-simpleaffy.x86_64 2.15.02-1.fc8 installed R-simpleaffy-devel.x86_64 2.15.02-1.fc8 installed R-systemfit.noarch 0.8-6.fc8 installed R-tkWidgets.noarch 1.16.0-1.fc8 installed R-vsn.x86_64 3.3.6-1.fc8 installed R-waveslim.x86_64 1.6-4.fc8 installed R-wavethresh.x86_64 2.2-7.fc8 installed R-widgetTools.noarch 1.15.0-1.fc8 installed R-xlahomology.noarch 1.16.0-1.fc8 installed R-xtable.noarch 1.5-1.fc8 installed
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r-devel@lists.fedoraproject.org
-
D.Enrique ESCOBAR ESPINOZA -
pingou -
Tom Callaway