Self Introduction: Jun Aruga

[Jun Aruga]

Hello, science people,

Let me introduce myself.
I am Jun Aruga.
I am working for a ARM base bio genome analysis project as my side
project with below ARM base HPC system (RHEL 7). I am interested in
packaging some bio tools to install it on the environment.
https://www.montblanc-project.eu/

First what I want to do is

* Updating samtools ( https://src.fedoraproject.org/rpms/samtools ) to
latet version 1.9.
* Adding new htslib RPM package with the sub package htslib-devel

The source as a reference.
* samtools: https://github.com/samtools/samtools
* htslib: https://github.com/samtools/htslib

On Debian, the samtools and htslib are available, I will refer the logic.
https://packages.debian.org/sid/samtools

I am excited to join this community!

-- 
Jun Aruga | He - His - Him

[Dominik 'Rathann' Mierzejewski]

On Saturday, 10 August 2019 at 11:32, Jun Aruga wrote:
>  Hello, science people,
>  
>  Let me introduce myself.
>  I am Jun Aruga. 
Welcome, Jun.

[...]
>  First what I want to do is
>  
>  * Updating samtools ( https://src.fedoraproject.org/rpms/samtools ) to
>  latet version 1.9.
>  * Adding new htslib RPM package with the sub package htslib-devel 
Great, let us know the review bug number once done. It's OK to post
a work-in-progress version that doesn't even build if you need
assistance with getting it to build.

Regards,
Dominik
-- 
Fedora   https://getfedora.org  |  RPM Fusion  http://rpmfusion.org
There should be a science of discontent. People need hard times and
oppression to develop psychic muscles.
        -- from "Collected Sayings of Muad'Dib" by the Princess Irulan

[Dave Love]

Jun Aruga <jaruga(a)redhat.com&gt; writes:

>  First what I want to do is
>
>  * Updating samtools ( https://src.fedoraproject.org/rpms/samtools ) to
>  latet version 1.9.
>  * Adding new htslib RPM package with the sub package htslib-devel 
You'll find (e.g. via https://fedoraproject.org/PackageReviewStatus/)
there's already a stalled review for htslib:
https://bugzilla.redhat.com/show_bug.cgi?id=1326504

Generally, also look on copr as well as bugzilla:
https://copr.fedorainfracloud.org/coprs/fulltext/?fulltext=htslib

[I thought I had an htslib-based samtools in copr, but no.]

>  On Debian, the samtools and htslib are available, I will refer the
> logic.
>  https://packages.debian.org/sid/samtools 
While it's often worth referring to Debian packaging, you're probably
better off starting with what the samtools maintainer already has in
copr, especially as Debian packaging is rather simpler.  There's also
OpenSUSE (and the OBS equivalent of copr) which has a recent samtools,
but OS spec files may need significant adjustment for Fedora.

For what it's worth, I'm starting to build some HPC packages for aarch64
in copr, including Extrae et al from the Mont Blanc stable.

[Jun Aruga]

Hi Dominik and Dave, thanks for the help and tips!

>  You'll find (e.g. via
> https://fedoraproject.org/PackageReviewStatus/)
>  there's already a stalled review for htslib:
>  https://bugzilla.redhat.com/show_bug.cgi?id=1326504 
Sure I will keep in mind to check the current review status and Copr, and etc.
I take a look at the ticket for htslib.

>  For what it's worth, I'm starting to build some HPC packages
> for aarch64
>  in copr, including Extrae et al from the Mont Blanc stable. 
Oh thanks. Yes, Mont Blanc arch is aarch64.

-- 
Jun Aruga | He - His - Him

[Jun Aruga]

>  > You'll find (e.g. via
> https://fedoraproject.org/PackageReviewStatus/)
>  > there's already a stalled review for htslib:
>  > https://bugzilla.redhat.com/show_bug.cgi?id=1326504
>
>  Sure I will keep in mind to check the current review status and Copr, and etc.
>  I take a look at the ticket for htslib. 
For the htslib bugzilla ticket
https://bugzilla.redhat.com/show_bug.cgi?id=1326504
I updated htslib.spec to the latest version 1.9, and commented on it.
Is there any item to fix for the htslib.spec?
Could you comment for the ticket ?

Thanks.

On Wed, Aug 14, 2019 at 11:17 AM Jun Aruga <jaruga(a)redhat.com&gt; wrote:
>
> Hi Dominik and Dave, thanks for the help and tips!
>
>  > You'll find (e.g. via
> https://fedoraproject.org/PackageReviewStatus/)
>  > there's already a stalled review for htslib:
>  > https://bugzilla.redhat.com/show_bug.cgi?id=1326504
>
>  Sure I will keep in mind to check the current review status and Copr, and etc.
>  I take a look at the ticket for htslib. 
>
> > For what it's worth, I'm starting to build some HPC packages for
aarch64
> > in copr, including Extrae et al from the Mont Blanc stable.
>
> Oh thanks. Yes, Mont Blanc arch is aarch64.
>
> --
> Jun Aruga | He - His - Him



-- 
Jun | He - His - Him
jaruga(a)redhat.com / IRC: jaruga

[Jun Aruga]

I wanted to post this again to let you know it.
Here is the bug number of htslib that required by the latest samtools.
https://bugzilla.redhat.com/show_bug.cgi?id=1326504

Thank you for the review!

-- 
Jun | He - His - Him