scm-commits June 2015

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37023 discussions

ahs3 pushed to acpica-tools (master). "Update source tarballs to 20150619 version. (..more)"
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

From c154a4d4095c7a78573c9b3a5be09ef15b482dac Mon Sep 17 00:00:00 2001 From: Al Stone <ahs3(a)redhat.com> Date: Mon, 29 Jun 2015 16:54:15 -0600 Subject: Update source tarballs to 20150619 version. Signed-off-by: Al Stone <ahs3(a)redhat.com> diff --git a/.gitignore b/.gitignore index fff61cd..a2d72c2 100644 --- a/.gitignore +++ b/.gitignore @@ -30,3 +30,5 @@ /acpitests-unix-20150410.tar.gz /acpica-unix2-20150515.tar.gz /acpitests-unix-20150515.tar.gz +/acpica-unix2-20150619.tar.gz +/acpitests-unix-20150619.tar.gz diff --git a/sources b/sources index 35be27a..03f519c 100644 --- a/sources +++ b/sources @@ -1,2 +1,2 @@ -2bc4a7ccc82de9df9fa964f784ecb29c acpica-unix2-20150515.tar.gz -ebb6bf9a2248af93910dc4f9a4ff19f8 acpitests-unix-20150515.tar.gz +99bda98356fcb616a89ab7eac8412cd0 acpica-unix2-20150619.tar.gz +583981bca5f9da89d3be0c28dd2ef819 acpitests-unix-20150619.tar.gz -- cgit v0.10.2 http://pkgs.fedoraproject.org/cgit/acpica-tools.git/commit/?h=master&id=c15…

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smani pushed to gimagereader (master). "Update to 3.1.2"
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

From a578ee62e5e31c9c9528930583583663fa08aedd Mon Sep 17 00:00:00 2001 From: Sandro Mani <manisandro(a)gmail.com> Date: Tue, 30 Jun 2015 23:47:11 +0200 Subject: Update to 3.1.2 diff --git a/.gitignore b/.gitignore index aa6f3ce..fb23d6b 100644 --- a/.gitignore +++ b/.gitignore @@ -6,3 +6,4 @@ /gimagereader-3.0.1.tar.xz /gimagereader-3.1.tar.xz /gimagereader-3.1.1.tar.xz +/gimagereader-3.1.2.tar.xz diff --git a/gimagereader.spec b/gimagereader.spec index bfe6a27..ee48819 100644 --- a/gimagereader.spec +++ b/gimagereader.spec @@ -1,6 +1,6 @@ Name: gimagereader -Version: 3.1.1 -Release: 2%{?dist} +Version: 3.1.2 +Release: 1%{?dist} Summary: A front-end to tesseract-ocr License: GPLv3+ @@ -140,7 +140,8 @@ fi %files common -f %{name}.lang -%doc AUTHORS ChangeLog COPYING NEWS README TODO +%license COPYING +%doc AUTHORS ChangeLog NEWS README TODO %{_datadir}/icons/hicolor/48x48/apps/%{name}.png %{_datadir}/icons/hicolor/128x128/apps/%{name}.png %{_datadir}/icons/hicolor/256x256/apps/%{name}.png @@ -158,6 +159,9 @@ fi %{_datadir}/applications/%{name}-qt5.desktop %changelog +* Wed Jun 30 2015 Sandro Mani <manisandro(a)gmail.com> - 3.1.2-1 +- Update to 3.1.2 + * Wed Jun 17 2015 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 3.1.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild diff --git a/sources b/sources index 8bb3a7c..622453e 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -fc6889d0618b5dc017b7e8f35d075772 gimagereader-3.1.1.tar.xz +131304714f4f2c1042d442388bceb8d4 gimagereader-3.1.2.tar.xz -- cgit v0.10.2 http://pkgs.fedoraproject.org/cgit/gimagereader.git/commit/?h=master&id=a57…

1 0

smani uploaded gimagereader-3.1.2.tar.xz for gimagereader
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

131304714f4f2c1042d442388bceb8d4 gimagereader-3.1.2.tar.xz http://pkgs.fedoraproject.org/lookaside/pkgs/gimagereader/gimagereader-3.1.…

1 0

sagitter pushed to XTandem (f22). "Retired because explicitely required by 'thegpm.org'"
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

From 2855e9dd9ac4b0c8816905ed449463b98ae8d6b3 Mon Sep 17 00:00:00 2001 From: sagitter <sagitter(a)fedoraproject.org> Date: Tue, 30 Jun 2015 22:56:53 +0200 Subject: Retired because explicitely required by 'thegpm.org' diff --git a/.gitignore b/.gitignore deleted file mode 100644 index 5709fcf..0000000 --- a/.gitignore +++ /dev/null @@ -1,2 +0,0 @@ -/tandem-linux-13-09-01-1.tar.gz -/tandem-linux-15-04-01-1.zip diff --git a/XTandem-fix-missing-include-string-h.patch b/XTandem-fix-missing-include-string-h.patch deleted file mode 100644 index 67f90bd..0000000 --- a/XTandem-fix-missing-include-string-h.patch +++ /dev/null @@ -1,74 +0,0 @@ -Fix missing #înclude <string.h> ---- a/src/base64.cpp -+++ b/src/base64.cpp -@@ -5,6 +5,7 @@ - #include "stdafx.h" - - #include "base64.h" -+#include "string.h" - - inline int getPosition( char buf ); - ---- a/src/saxhandler.h -+++ b/src/saxhandler.h -@@ -135,6 +135,7 @@ - #include <string> // strcpm - #include <vector> - #include "mspectrum.h" -+#include "string.h" - - /** - * eXpat SAX parser wrapper. ---- a/src/mhistogram.h -+++ b/src/mhistogram.h -@@ -131,6 +131,8 @@ - #ifndef MHISTOGRAM_H - #define MHISTOGRAM_H - -+#include "string.h" -+ - // File version: 2003-07-01 - - /* ---- a/src/mcleave.h -+++ b/src/mcleave.h -@@ -131,6 +131,8 @@ - #ifndef MCLEAVE_H - #define MCLEAVE_H - -+#include "string.h" -+ - // File version: 2006-03-10 - /* - * mcleave is a specialty class meant to store information about protein cleavage specificity ---- a/src/mmotif.h -+++ b/src/mmotif.h -@@ -131,6 +131,8 @@ - #ifndef MMOTIF_H - #define MMOTIF_H - -+#include "string.h" -+ - // File version: 2004-06-01 - // File version: 2005-01-01 - /* ---- a/src/msequenceserver.cpp -+++ b/src/msequenceserver.cpp -@@ -145,6 +145,7 @@ - #include "msequenceserver.h" - #include "xmltaxonomy.h" - #include <ctime> -+#include "string.h" - - msequenceServer::msequenceServer(void) - { ---- a/src/p3msequenceserver.cpp -+++ b/src/p3msequenceserver.cpp -@@ -145,6 +145,7 @@ - #include "msequenceserver.h" - #include "xmltaxonomy.h" - #include <ctime> -+#include "string.h" - - p3msequenceServer::p3msequenceServer(void) - { diff --git a/XTandem-input_parameters_error.patch b/XTandem-input_parameters_error.patch deleted file mode 100644 index 1c82de4..0000000 --- a/XTandem-input_parameters_error.patch +++ /dev/null @@ -1,35 +0,0 @@ -## This patch is created by the command 'diff -U 5 --strip-trailing-cr -Nar tandem.orig.cpp tandem.cpp' -## ---- src/tandem.orig.cpp 2013-06-15 02:49:35.000000000 +0200 -+++ src/tandem.cpp 2014-10-05 12:05:43.046832342 +0200 -@@ -215,12 +215,12 @@ - - #endif - unsigned long a = 0; - while(a < lMaxThreads) { - pProcess[a] = NULL; -- pHandle[a] = NULL; -- pId[a] = NULL; -+ pHandle[a] = 0; -+ pId[a] = 0; - a++; - } - pProcess[0] = new mprocess; - cout << "Loading spectra"; - cout.flush(); -@@ -228,11 +228,11 @@ - * Initialize the first mprocess object with the input file name. - */ - char *pS = new char[1024]; - strcpy(pS,argv[1]); - if(!pProcess[0]->load(pS)) { -- cout << "\n\nAn error was detected while loading the input parameters.\nPlease follow the advice above or contact a GPM administrator to help you."; -+ cout << "\n\nAn error was detected while loading the input parameters.\nPlease follow the advice above or contact a GPM administrator to help you.\n"; - delete pProcess[0]; - delete pProcess; - return -4; - } - cout << " loaded.\n"; - - - diff --git a/XTandem.spec b/XTandem.spec deleted file mode 100644 index b8e8504..0000000 --- a/XTandem.spec +++ /dev/null @@ -1,94 +0,0 @@ -%global tandem tandem-linux-15-04-01-1 - -Name: XTandem -Summary: X!TANDEM Spectrum Modeler -Version: 150401.1 -Release: 3%{?dist} -License: Artistic 2.0 -URL: http://www.thegpm.org/tandem/ -Source0: ftp://ftp.thegpm.org/projects/tandem/source/%{tandem}.zip - -##https://bugzilla.redhat.com/show_bug.cgi?id=1221116 -ExcludeArch: ppc64 s390 s390x - -Patch0: %{name}-fix-missing-include-string-h.patch -Patch1: %{name}-input_parameters_error.patch - -BuildRequires: expat-devel, dos2unix - -%description -X! Tandem is software that can match tandem mass spectra with peptide sequences, -in a process that has come to be known as protein identification. - -This software has a very simple, sophisticated \ -application programming interface (API): -it simply takes an XML file of instructions on its command line, -and outputs the results into an XML file, which has been specified \ -in the input XML file. -The output file format is described at \ -'http://www.thegpm.org/docs/X_series_output_form.pdf'. - -%prep -%setup -q -n %{tandem} - -dos2unix src/tandem.cpp - -%patch0 -p1 -%patch1 -p0 - -##Rename executable files -sed -e 's|./bin/tandem.exe|./bin/tandem|g' -i src/Makefile -sed -e 's|./bin/p3.exe|./bin/p3|g' -i src/Makefile - -sed -i 's/\r$//' README -sed -i 's/\r$//' LICENSE - -##Remove pre-compiled executable files -for i in `find ./bin -type f $ -name "*.exe" $`; do - rm -f $i -done - -##Remove bundled files -rm -f src/expat.h src/expat_external.h - -%build -make %{?_smp_mflags} -C src \ - CXXFLAGS="$RPM_OPT_FLAGS -DGCC4_3 -DPLUGGABLE_SCORING -DX_P3" \ - LDFLAGS="%{__global_ldflags} -L%{_libdir} -lpthread -lm -lexpat" - -%install - -##X!Tandem manual installation -mkdir -p %{buildroot}%{_bindir} -install -pm 755 bin/tandem %{buildroot}%{_bindir} - -%check -pushd bin - ./tandem input.xml -popd - -%files -%license LICENSE -%doc README -%{_bindir}/tandem - -%changelog -* Wed May 13 2015 Antonio Trande <sagitter(a)fedoraproject.org> - 150401.1-3 -- Excludearch ppc64 s390 s390x - -* Tue May 12 2015 Antonio Trande <sagitter(a)fedoraproject.org> - 150401.1-2 -- Test disabled on PPC64 (std::bad_alloc error) - -* Fri May 08 2015 Antonio Trande <sagitter(a)fedoraproject.org> - 150401.1-1 -- Update to tandem-linux-15-04-01-1 -- Removed expat bundled files -- Removed pre-compiled .exe files - -* Sat May 02 2015 Kalev Lember <kalevlember(a)gmail.com> - 130901.1-3 -- Rebuilt for GCC 5 C++11 ABI change - -* Sun Oct 05 2014 Antonio Trande <sagitter(a)fedoraproject.org> 130901.1-2 -- Added a patch to fix the 'input parameters' error - -* Mon Sep 29 2014 Antonio Trande <sagitter(a)fedoraproject.org> 130901.1-1 -- First package diff --git a/dead.package b/dead.package new file mode 100644 index 0000000..301f0a8 --- /dev/null +++ b/dead.package @@ -0,0 +1 @@ +Retired because explicitely required by 'thegpm.org' diff --git a/sources b/sources deleted file mode 100644 index 0797478..0000000 --- a/sources +++ /dev/null @@ -1 +0,0 @@ -6f40a80f58ef710607075e112abcbeac tandem-linux-15-04-01-1.zip -- cgit v0.10.2 http://pkgs.fedoraproject.org/cgit/XTandem.git/commit/?h=f22&id=2855e9dd9ac…

1 0

sagitter pushed to XTandem (f21). "Retired because explicitely required by 'thegpm.org'"
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

From ea8a7799554f298d602c596949dad48d0f4d31ac Mon Sep 17 00:00:00 2001 From: sagitter <sagitter(a)fedoraproject.org> Date: Tue, 30 Jun 2015 22:55:57 +0200 Subject: Retired because explicitely required by 'thegpm.org' diff --git a/.gitignore b/.gitignore deleted file mode 100644 index 5709fcf..0000000 --- a/.gitignore +++ /dev/null @@ -1,2 +0,0 @@ -/tandem-linux-13-09-01-1.tar.gz -/tandem-linux-15-04-01-1.zip diff --git a/XTandem-fix-missing-include-string-h.patch b/XTandem-fix-missing-include-string-h.patch deleted file mode 100644 index 67f90bd..0000000 --- a/XTandem-fix-missing-include-string-h.patch +++ /dev/null @@ -1,74 +0,0 @@ -Fix missing #înclude <string.h> ---- a/src/base64.cpp -+++ b/src/base64.cpp -@@ -5,6 +5,7 @@ - #include "stdafx.h" - - #include "base64.h" -+#include "string.h" - - inline int getPosition( char buf ); - ---- a/src/saxhandler.h -+++ b/src/saxhandler.h -@@ -135,6 +135,7 @@ - #include <string> // strcpm - #include <vector> - #include "mspectrum.h" -+#include "string.h" - - /** - * eXpat SAX parser wrapper. ---- a/src/mhistogram.h -+++ b/src/mhistogram.h -@@ -131,6 +131,8 @@ - #ifndef MHISTOGRAM_H - #define MHISTOGRAM_H - -+#include "string.h" -+ - // File version: 2003-07-01 - - /* ---- a/src/mcleave.h -+++ b/src/mcleave.h -@@ -131,6 +131,8 @@ - #ifndef MCLEAVE_H - #define MCLEAVE_H - -+#include "string.h" -+ - // File version: 2006-03-10 - /* - * mcleave is a specialty class meant to store information about protein cleavage specificity ---- a/src/mmotif.h -+++ b/src/mmotif.h -@@ -131,6 +131,8 @@ - #ifndef MMOTIF_H - #define MMOTIF_H - -+#include "string.h" -+ - // File version: 2004-06-01 - // File version: 2005-01-01 - /* ---- a/src/msequenceserver.cpp -+++ b/src/msequenceserver.cpp -@@ -145,6 +145,7 @@ - #include "msequenceserver.h" - #include "xmltaxonomy.h" - #include <ctime> -+#include "string.h" - - msequenceServer::msequenceServer(void) - { ---- a/src/p3msequenceserver.cpp -+++ b/src/p3msequenceserver.cpp -@@ -145,6 +145,7 @@ - #include "msequenceserver.h" - #include "xmltaxonomy.h" - #include <ctime> -+#include "string.h" - - p3msequenceServer::p3msequenceServer(void) - { diff --git a/XTandem-input_parameters_error.patch b/XTandem-input_parameters_error.patch deleted file mode 100644 index 1c82de4..0000000 --- a/XTandem-input_parameters_error.patch +++ /dev/null @@ -1,35 +0,0 @@ -## This patch is created by the command 'diff -U 5 --strip-trailing-cr -Nar tandem.orig.cpp tandem.cpp' -## ---- src/tandem.orig.cpp 2013-06-15 02:49:35.000000000 +0200 -+++ src/tandem.cpp 2014-10-05 12:05:43.046832342 +0200 -@@ -215,12 +215,12 @@ - - #endif - unsigned long a = 0; - while(a < lMaxThreads) { - pProcess[a] = NULL; -- pHandle[a] = NULL; -- pId[a] = NULL; -+ pHandle[a] = 0; -+ pId[a] = 0; - a++; - } - pProcess[0] = new mprocess; - cout << "Loading spectra"; - cout.flush(); -@@ -228,11 +228,11 @@ - * Initialize the first mprocess object with the input file name. - */ - char *pS = new char[1024]; - strcpy(pS,argv[1]); - if(!pProcess[0]->load(pS)) { -- cout << "\n\nAn error was detected while loading the input parameters.\nPlease follow the advice above or contact a GPM administrator to help you."; -+ cout << "\n\nAn error was detected while loading the input parameters.\nPlease follow the advice above or contact a GPM administrator to help you.\n"; - delete pProcess[0]; - delete pProcess; - return -4; - } - cout << " loaded.\n"; - - - diff --git a/XTandem.spec b/XTandem.spec deleted file mode 100644 index b8e8504..0000000 --- a/XTandem.spec +++ /dev/null @@ -1,94 +0,0 @@ -%global tandem tandem-linux-15-04-01-1 - -Name: XTandem -Summary: X!TANDEM Spectrum Modeler -Version: 150401.1 -Release: 3%{?dist} -License: Artistic 2.0 -URL: http://www.thegpm.org/tandem/ -Source0: ftp://ftp.thegpm.org/projects/tandem/source/%{tandem}.zip - -##https://bugzilla.redhat.com/show_bug.cgi?id=1221116 -ExcludeArch: ppc64 s390 s390x - -Patch0: %{name}-fix-missing-include-string-h.patch -Patch1: %{name}-input_parameters_error.patch - -BuildRequires: expat-devel, dos2unix - -%description -X! Tandem is software that can match tandem mass spectra with peptide sequences, -in a process that has come to be known as protein identification. - -This software has a very simple, sophisticated \ -application programming interface (API): -it simply takes an XML file of instructions on its command line, -and outputs the results into an XML file, which has been specified \ -in the input XML file. -The output file format is described at \ -'http://www.thegpm.org/docs/X_series_output_form.pdf'. - -%prep -%setup -q -n %{tandem} - -dos2unix src/tandem.cpp - -%patch0 -p1 -%patch1 -p0 - -##Rename executable files -sed -e 's|./bin/tandem.exe|./bin/tandem|g' -i src/Makefile -sed -e 's|./bin/p3.exe|./bin/p3|g' -i src/Makefile - -sed -i 's/\r$//' README -sed -i 's/\r$//' LICENSE - -##Remove pre-compiled executable files -for i in `find ./bin -type f $ -name "*.exe" $`; do - rm -f $i -done - -##Remove bundled files -rm -f src/expat.h src/expat_external.h - -%build -make %{?_smp_mflags} -C src \ - CXXFLAGS="$RPM_OPT_FLAGS -DGCC4_3 -DPLUGGABLE_SCORING -DX_P3" \ - LDFLAGS="%{__global_ldflags} -L%{_libdir} -lpthread -lm -lexpat" - -%install - -##X!Tandem manual installation -mkdir -p %{buildroot}%{_bindir} -install -pm 755 bin/tandem %{buildroot}%{_bindir} - -%check -pushd bin - ./tandem input.xml -popd - -%files -%license LICENSE -%doc README -%{_bindir}/tandem - -%changelog -* Wed May 13 2015 Antonio Trande <sagitter(a)fedoraproject.org> - 150401.1-3 -- Excludearch ppc64 s390 s390x - -* Tue May 12 2015 Antonio Trande <sagitter(a)fedoraproject.org> - 150401.1-2 -- Test disabled on PPC64 (std::bad_alloc error) - -* Fri May 08 2015 Antonio Trande <sagitter(a)fedoraproject.org> - 150401.1-1 -- Update to tandem-linux-15-04-01-1 -- Removed expat bundled files -- Removed pre-compiled .exe files - -* Sat May 02 2015 Kalev Lember <kalevlember(a)gmail.com> - 130901.1-3 -- Rebuilt for GCC 5 C++11 ABI change - -* Sun Oct 05 2014 Antonio Trande <sagitter(a)fedoraproject.org> 130901.1-2 -- Added a patch to fix the 'input parameters' error - -* Mon Sep 29 2014 Antonio Trande <sagitter(a)fedoraproject.org> 130901.1-1 -- First package diff --git a/dead.package b/dead.package new file mode 100644 index 0000000..301f0a8 --- /dev/null +++ b/dead.package @@ -0,0 +1 @@ +Retired because explicitely required by 'thegpm.org' diff --git a/sources b/sources deleted file mode 100644 index 0797478..0000000 --- a/sources +++ /dev/null @@ -1 +0,0 @@ -6f40a80f58ef710607075e112abcbeac tandem-linux-15-04-01-1.zip -- cgit v0.10.2 http://pkgs.fedoraproject.org/cgit/XTandem.git/commit/?h=f21&id=ea8a7799554…

1 0

sagitter pushed to XTandem (master). "Retired because explicitely required by 'thegpm.org'"
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

From 3692a7f00a3b8e550bfbbc659ebd9bbe74dda918 Mon Sep 17 00:00:00 2001 From: sagitter <sagitter(a)fedoraproject.org> Date: Tue, 30 Jun 2015 22:54:58 +0200 Subject: Retired because explicitely required by 'thegpm.org' diff --git a/.gitignore b/.gitignore deleted file mode 100644 index 5709fcf..0000000 --- a/.gitignore +++ /dev/null @@ -1,2 +0,0 @@ -/tandem-linux-13-09-01-1.tar.gz -/tandem-linux-15-04-01-1.zip diff --git a/XTandem-fix-missing-include-string-h.patch b/XTandem-fix-missing-include-string-h.patch deleted file mode 100644 index 67f90bd..0000000 --- a/XTandem-fix-missing-include-string-h.patch +++ /dev/null @@ -1,74 +0,0 @@ -Fix missing #înclude <string.h> ---- a/src/base64.cpp -+++ b/src/base64.cpp -@@ -5,6 +5,7 @@ - #include "stdafx.h" - - #include "base64.h" -+#include "string.h" - - inline int getPosition( char buf ); - ---- a/src/saxhandler.h -+++ b/src/saxhandler.h -@@ -135,6 +135,7 @@ - #include <string> // strcpm - #include <vector> - #include "mspectrum.h" -+#include "string.h" - - /** - * eXpat SAX parser wrapper. ---- a/src/mhistogram.h -+++ b/src/mhistogram.h -@@ -131,6 +131,8 @@ - #ifndef MHISTOGRAM_H - #define MHISTOGRAM_H - -+#include "string.h" -+ - // File version: 2003-07-01 - - /* ---- a/src/mcleave.h -+++ b/src/mcleave.h -@@ -131,6 +131,8 @@ - #ifndef MCLEAVE_H - #define MCLEAVE_H - -+#include "string.h" -+ - // File version: 2006-03-10 - /* - * mcleave is a specialty class meant to store information about protein cleavage specificity ---- a/src/mmotif.h -+++ b/src/mmotif.h -@@ -131,6 +131,8 @@ - #ifndef MMOTIF_H - #define MMOTIF_H - -+#include "string.h" -+ - // File version: 2004-06-01 - // File version: 2005-01-01 - /* ---- a/src/msequenceserver.cpp -+++ b/src/msequenceserver.cpp -@@ -145,6 +145,7 @@ - #include "msequenceserver.h" - #include "xmltaxonomy.h" - #include <ctime> -+#include "string.h" - - msequenceServer::msequenceServer(void) - { ---- a/src/p3msequenceserver.cpp -+++ b/src/p3msequenceserver.cpp -@@ -145,6 +145,7 @@ - #include "msequenceserver.h" - #include "xmltaxonomy.h" - #include <ctime> -+#include "string.h" - - p3msequenceServer::p3msequenceServer(void) - { diff --git a/XTandem-input_parameters_error.patch b/XTandem-input_parameters_error.patch deleted file mode 100644 index 1c82de4..0000000 --- a/XTandem-input_parameters_error.patch +++ /dev/null @@ -1,35 +0,0 @@ -## This patch is created by the command 'diff -U 5 --strip-trailing-cr -Nar tandem.orig.cpp tandem.cpp' -## ---- src/tandem.orig.cpp 2013-06-15 02:49:35.000000000 +0200 -+++ src/tandem.cpp 2014-10-05 12:05:43.046832342 +0200 -@@ -215,12 +215,12 @@ - - #endif - unsigned long a = 0; - while(a < lMaxThreads) { - pProcess[a] = NULL; -- pHandle[a] = NULL; -- pId[a] = NULL; -+ pHandle[a] = 0; -+ pId[a] = 0; - a++; - } - pProcess[0] = new mprocess; - cout << "Loading spectra"; - cout.flush(); -@@ -228,11 +228,11 @@ - * Initialize the first mprocess object with the input file name. - */ - char *pS = new char[1024]; - strcpy(pS,argv[1]); - if(!pProcess[0]->load(pS)) { -- cout << "\n\nAn error was detected while loading the input parameters.\nPlease follow the advice above or contact a GPM administrator to help you."; -+ cout << "\n\nAn error was detected while loading the input parameters.\nPlease follow the advice above or contact a GPM administrator to help you.\n"; - delete pProcess[0]; - delete pProcess; - return -4; - } - cout << " loaded.\n"; - - - diff --git a/XTandem.spec b/XTandem.spec deleted file mode 100644 index 2893c30..0000000 --- a/XTandem.spec +++ /dev/null @@ -1,97 +0,0 @@ -%global tandem tandem-linux-15-04-01-1 - -Name: XTandem -Summary: X!TANDEM Spectrum Modeler -Version: 150401.1 -Release: 4%{?dist} -License: Artistic 2.0 -URL: http://www.thegpm.org/tandem/ -Source0: ftp://ftp.thegpm.org/projects/tandem/source/%{tandem}.zip - -##https://bugzilla.redhat.com/show_bug.cgi?id=1221116 -ExcludeArch: ppc64 s390 s390x - -Patch0: %{name}-fix-missing-include-string-h.patch -Patch1: %{name}-input_parameters_error.patch - -BuildRequires: expat-devel, dos2unix - -%description -X! Tandem is software that can match tandem mass spectra with peptide sequences, -in a process that has come to be known as protein identification. - -This software has a very simple, sophisticated \ -application programming interface (API): -it simply takes an XML file of instructions on its command line, -and outputs the results into an XML file, which has been specified \ -in the input XML file. -The output file format is described at \ -'http://www.thegpm.org/docs/X_series_output_form.pdf'. - -%prep -%setup -q -n %{tandem} - -dos2unix src/tandem.cpp - -%patch0 -p1 -%patch1 -p0 - -##Rename executable files -sed -e 's|./bin/tandem.exe|./bin/tandem|g' -i src/Makefile -sed -e 's|./bin/p3.exe|./bin/p3|g' -i src/Makefile - -sed -i 's/\r$//' README -sed -i 's/\r$//' LICENSE - -##Remove pre-compiled executable files -for i in `find ./bin -type f $ -name "*.exe" $`; do - rm -f $i -done - -##Remove bundled files -rm -f src/expat.h src/expat_external.h - -%build -make %{?_smp_mflags} -C src \ - CXXFLAGS="$RPM_OPT_FLAGS -DGCC4_3 -DPLUGGABLE_SCORING -DX_P3" \ - LDFLAGS="%{__global_ldflags} -L%{_libdir} -lpthread -lm -lexpat" - -%install - -##X!Tandem manual installation -mkdir -p %{buildroot}%{_bindir} -install -pm 755 bin/tandem %{buildroot}%{_bindir} - -%check -pushd bin - ./tandem input.xml -popd - -%files -%license LICENSE -%doc README -%{_bindir}/tandem - -%changelog -* Tue Jun 16 2015 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 150401.1-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild - -* Wed May 13 2015 Antonio Trande <sagitter(a)fedoraproject.org> - 150401.1-3 -- Excludearch ppc64 s390 s390x - -* Tue May 12 2015 Antonio Trande <sagitter(a)fedoraproject.org> - 150401.1-2 -- Test disabled on PPC64 (std::bad_alloc error) - -* Fri May 08 2015 Antonio Trande <sagitter(a)fedoraproject.org> - 150401.1-1 -- Update to tandem-linux-15-04-01-1 -- Removed expat bundled files -- Removed pre-compiled .exe files - -* Sat May 02 2015 Kalev Lember <kalevlember(a)gmail.com> - 130901.1-3 -- Rebuilt for GCC 5 C++11 ABI change - -* Sun Oct 05 2014 Antonio Trande <sagitter(a)fedoraproject.org> 130901.1-2 -- Added a patch to fix the 'input parameters' error - -* Mon Sep 29 2014 Antonio Trande <sagitter(a)fedoraproject.org> 130901.1-1 -- First package diff --git a/dead.package b/dead.package new file mode 100644 index 0000000..301f0a8 --- /dev/null +++ b/dead.package @@ -0,0 +1 @@ +Retired because explicitely required by 'thegpm.org' diff --git a/sources b/sources deleted file mode 100644 index 0797478..0000000 --- a/sources +++ /dev/null @@ -1 +0,0 @@ -6f40a80f58ef710607075e112abcbeac tandem-linux-15-04-01-1.zip -- cgit v0.10.2 http://pkgs.fedoraproject.org/cgit/XTandem.git/commit/?h=master&id=3692a7f0…

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kalev pushed to pygobject3 (f22). "Update to 3.16.2"
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

From a6747995ad989fe2d858f39dc3eb26e6b7a5df5d Mon Sep 17 00:00:00 2001 From: Kalev Lember <klember(a)redhat.com> Date: Tue, 30 Jun 2015 22:50:29 +0200 Subject: Update to 3.16.2 diff --git a/pygobject3.spec b/pygobject3.spec index d2638cc..503ed33 100644 --- a/pygobject3.spec +++ b/pygobject3.spec @@ -21,7 +21,7 @@ ### Abstract ### Name: pygobject3 -Version: 3.16.1 +Version: 3.16.2 Release: 1%{?dist} License: LGPLv2+ and MIT Group: Development/Languages @@ -211,6 +211,9 @@ xvfb-run make DESTDIR=$RPM_BUILD_ROOT check %{verbosity} %endif # with_python3 %changelog +* Tue Jun 30 2015 Kalev Lember <klember(a)redhat.com> - 3.16.2-1 +- Update to 3.16.2 + * Tue Apr 14 2015 Kalev Lember <kalevlember(a)gmail.com> - 3.16.1-1 - Update to 3.16.1 diff --git a/sources b/sources index 62a5a26..b126330 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -36bf04253d6b8999f238fd05ce9f8ac4 pygobject-3.16.1.tar.xz +8a3720efa69dd2d520e0b21b5d9e7c19 pygobject-3.16.2.tar.xz -- cgit v0.10.2 http://pkgs.fedoraproject.org/cgit/pygobject3.git/commit/?h=f22&id=a6747995…

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sagitter pushed to XTandem (f20). "Retired because explicitely required by 'thegpm.org'"
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

From 6841477a18dab16c197334fe9ac2328f0a2b0500 Mon Sep 17 00:00:00 2001 From: sagitter <sagitter(a)fedoraproject.org> Date: Tue, 30 Jun 2015 22:51:46 +0200 Subject: Retired because explicitely required by 'thegpm.org' diff --git a/.gitignore b/.gitignore deleted file mode 100644 index 7e0941f..0000000 --- a/.gitignore +++ /dev/null @@ -1 +0,0 @@ -/tandem-linux-13-09-01-1.tar.gz diff --git a/XTandem-fix-missing-include-string-h.patch b/XTandem-fix-missing-include-string-h.patch deleted file mode 100644 index 67f90bd..0000000 --- a/XTandem-fix-missing-include-string-h.patch +++ /dev/null @@ -1,74 +0,0 @@ -Fix missing #înclude <string.h> ---- a/src/base64.cpp -+++ b/src/base64.cpp -@@ -5,6 +5,7 @@ - #include "stdafx.h" - - #include "base64.h" -+#include "string.h" - - inline int getPosition( char buf ); - ---- a/src/saxhandler.h -+++ b/src/saxhandler.h -@@ -135,6 +135,7 @@ - #include <string> // strcpm - #include <vector> - #include "mspectrum.h" -+#include "string.h" - - /** - * eXpat SAX parser wrapper. ---- a/src/mhistogram.h -+++ b/src/mhistogram.h -@@ -131,6 +131,8 @@ - #ifndef MHISTOGRAM_H - #define MHISTOGRAM_H - -+#include "string.h" -+ - // File version: 2003-07-01 - - /* ---- a/src/mcleave.h -+++ b/src/mcleave.h -@@ -131,6 +131,8 @@ - #ifndef MCLEAVE_H - #define MCLEAVE_H - -+#include "string.h" -+ - // File version: 2006-03-10 - /* - * mcleave is a specialty class meant to store information about protein cleavage specificity ---- a/src/mmotif.h -+++ b/src/mmotif.h -@@ -131,6 +131,8 @@ - #ifndef MMOTIF_H - #define MMOTIF_H - -+#include "string.h" -+ - // File version: 2004-06-01 - // File version: 2005-01-01 - /* ---- a/src/msequenceserver.cpp -+++ b/src/msequenceserver.cpp -@@ -145,6 +145,7 @@ - #include "msequenceserver.h" - #include "xmltaxonomy.h" - #include <ctime> -+#include "string.h" - - msequenceServer::msequenceServer(void) - { ---- a/src/p3msequenceserver.cpp -+++ b/src/p3msequenceserver.cpp -@@ -145,6 +145,7 @@ - #include "msequenceserver.h" - #include "xmltaxonomy.h" - #include <ctime> -+#include "string.h" - - p3msequenceServer::p3msequenceServer(void) - { diff --git a/XTandem-input_parameters_error.patch b/XTandem-input_parameters_error.patch deleted file mode 100644 index 1c82de4..0000000 --- a/XTandem-input_parameters_error.patch +++ /dev/null @@ -1,35 +0,0 @@ -## This patch is created by the command 'diff -U 5 --strip-trailing-cr -Nar tandem.orig.cpp tandem.cpp' -## ---- src/tandem.orig.cpp 2013-06-15 02:49:35.000000000 +0200 -+++ src/tandem.cpp 2014-10-05 12:05:43.046832342 +0200 -@@ -215,12 +215,12 @@ - - #endif - unsigned long a = 0; - while(a < lMaxThreads) { - pProcess[a] = NULL; -- pHandle[a] = NULL; -- pId[a] = NULL; -+ pHandle[a] = 0; -+ pId[a] = 0; - a++; - } - pProcess[0] = new mprocess; - cout << "Loading spectra"; - cout.flush(); -@@ -228,11 +228,11 @@ - * Initialize the first mprocess object with the input file name. - */ - char *pS = new char[1024]; - strcpy(pS,argv[1]); - if(!pProcess[0]->load(pS)) { -- cout << "\n\nAn error was detected while loading the input parameters.\nPlease follow the advice above or contact a GPM administrator to help you."; -+ cout << "\n\nAn error was detected while loading the input parameters.\nPlease follow the advice above or contact a GPM administrator to help you.\n"; - delete pProcess[0]; - delete pProcess; - return -4; - } - cout << " loaded.\n"; - - - diff --git a/XTandem.spec b/XTandem.spec deleted file mode 100644 index eda3f61..0000000 --- a/XTandem.spec +++ /dev/null @@ -1,68 +0,0 @@ -%global tandem tandem-linux-13-09-01-1 - -Name: XTandem -Summary: X!TANDEM Spectrum Modeler -Version: 130901.1 -Release: 2%{?dist} -License: Artistic 2.0 -URL: http://www.thegpm.org/tandem/ -Source0: ftp://ftp.thegpm.org/projects/tandem/source/%{tandem}.tar.gz - -Patch0: %{name}-fix-missing-include-string-h.patch -Patch1: %{name}-input_parameters_error.patch - -BuildRequires: expat-devel, dos2unix - -%description -X! Tandem is software that can match tandem mass spectra with peptide sequences, -in a process that has come to be known as protein identification. - -This software has a very simple, sophisticated \ -application programming interface (API): -it simply takes an XML file of instructions on its command line, -and outputs the results into an XML file, which has been specified \ -in the input XML file. -The output file format is described at \ -'http://www.thegpm.org/docs/X_series_output_form.pdf'. - -%prep -%setup -q -n %{tandem} - -dos2unix src/tandem.cpp - -%patch0 -p1 -%patch1 -p0 - -##Rename executable files -sed -e 's|./bin/tandem.exe|./bin/tandem|g' -i src/Makefile -sed -e 's|./bin/p3.exe|./bin/p3|g' -i src/Makefile - -sed -i 's/\r$//' README -sed -i 's/\r$//' LICENSE - -%build -make %{?_smp_mflags} -C src \ - CXXFLAGS="$RPM_OPT_FLAGS -DGCC4_3 -DPLUGGABLE_SCORING -DX_P3" \ - LDFLAGS="-L%{_libdir} -lpthread -lm -lexpat" - -%install - -##X!Tandem manual installation -mkdir -p %{buildroot}%{_bindir} -install -pm 755 bin/tandem %{buildroot}%{_bindir} - -%check -pushd bin - ./tandem input.xml -popd - -%files -%doc LICENSE README -%{_bindir}/tandem - -%changelog -* Sun Oct 05 2014 Antonio Trande <sagitter(a)fedoraproject.org> 130901.1-2 -- Added a patch to fix the 'input parameters' error - -* Mon Sep 29 2014 Antonio Trande <sagitter(a)fedoraproject.org> 130901.1-1 -- First package diff --git a/dead.package b/dead.package new file mode 100644 index 0000000..301f0a8 --- /dev/null +++ b/dead.package @@ -0,0 +1 @@ +Retired because explicitely required by 'thegpm.org' diff --git a/sources b/sources deleted file mode 100644 index 0f70c58..0000000 --- a/sources +++ /dev/null @@ -1 +0,0 @@ -8ce32eadee96422897e70acdc6228830 tandem-linux-13-09-01-1.tar.gz -- cgit v0.10.2 http://pkgs.fedoraproject.org/cgit/XTandem.git/commit/?h=f20&id=6841477a18d…

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kalev uploaded pygobject-3.16.2.tar.xz for pygobject3
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

8a3720efa69dd2d520e0b21b5d9e7c19 pygobject-3.16.2.tar.xz http://pkgs.fedoraproject.org/lookaside/pkgs/pygobject3/pygobject-3.16.2.ta…

1 0

goeran pushed to mj (master). "The %{?dist} tag is now mandatory. BZ #1237178"
by notifications＠fedoraproject.org 30 Jun '15

30 Jun '15

From 6fb4bebcc7bef58db0ce3cadf3268fc46d9e1b1c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?G=C3=B6ran=20Uddeborg?= <goeran(a)uddeborg.se> Date: Tue, 30 Jun 2015 22:19:00 +0200 Subject: The %{?dist} tag is now mandatory. BZ #1237178 diff --git a/mj.spec b/mj.spec index 626791d..eb85ef3 100644 --- a/mj.spec +++ b/mj.spec @@ -1,6 +1,6 @@ Name: mj Version: 1.14 -Release: 7 +Release: 7%{?dist} Summary: Mah-Jong program with network option Summary(sv): Mah-Jong-program med nätmöjlighet -- cgit v0.10.2 http://pkgs.fedoraproject.org/cgit/mj.git/commit/?h=master&id=6fb4bebcc7bef…

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