GDAL Code Dump

[Clifford Snow]

I'm getting a core dump using any of the gdal utilities on F32. For example
running orginfo --help returns

Usage: ogrinfo [--help-general] [-ro] [-q] [-where
restricted_where|@filename]
               [-spat xmin ymin xmax ymax] [-geomfield field] [-fid fid]
               [-sql statement|@filename] [-dialect sql_dialect] [-al]
[-rl] [-so] [-fields={YES/NO}]
               [-geom={YES/NO/SUMMARY}] [[-oo NAME=VALUE] ...]
               [-nomd] [-listmdd] [-mdd domain|`all`]*
               [-nocount] [-noextent] [-wkt_format WKT1|WKT2|...]
               datasource_name [layer [layer ...]]
free(): invalid pointer
Aborted (core dumped)

I tried reinstalling all components but still have the same problem.
Bugzilla doesn't show any open bugs. Is anyone else experiencing problems
with GDAL?

Thanks,
Clifford

[Ed Greshko]

On 2020-09-12 06:15, Clifford Snow wrote:
> I'm getting a core dump using any of the gdal utilities on F32. For example running orginfo --help returns
>
> Usage: ogrinfo [--help-general] [-ro] [-q] [-where restricted_where|@filename]
>                [-spat xmin ymin xmax ymax] [-geomfield field] [-fid fid]
>                [-sql statement|@filename] [-dialect sql_dialect] [-al] [-rl] [-so] [-fields={YES/NO}]
>                [-geom={YES/NO/SUMMARY}] [[-oo NAME=VALUE] ...]
>                [-nomd] [-listmdd] [-mdd domain|`all`]*
>                [-nocount] [-noextent] [-wkt_format WKT1|WKT2|...]
>                datasource_name [layer [layer ...]]
> free(): invalid pointer
> Aborted (core dumped)
>
> I tried reinstalling all components but still have the same problem. Bugzilla doesn't show any open bugs. Is anyone else experiencing problems with GDAL?

Installed gdal on 2 F32 VM's.  Once Workstation the other KDE.

Both work just fine.

[egreshko@f32g ~]$  ogrinfo --help
Usage: ogrinfo [--help-general] [-ro] [-q] [-where restricted_where|@filename]
               [-spat xmin ymin xmax ymax] [-geomfield field] [-fid fid]
               [-sql statement|@filename] [-dialect sql_dialect] [-al] [-rl] [-so] [-fields={YES/NO}]
               [-geom={YES/NO/SUMMARY}] [[-oo NAME=VALUE] ...]
               [-nomd] [-listmdd] [-mdd domain|`all`]*
               [-nocount] [-noextent] [-wkt_format WKT1|WKT2|...]
               datasource_name [layer [layer ...]]
[egreshko@f32g ~]$

[George N. White III]

On Fri, 11 Sep 2020 at 19:16, Clifford Snow  wrote:
> I'm getting a core dump using any of the gdal utilities on F32. For
> example running orginfo --help returns
>
> Usage: ogrinfo [--help-general] [-ro] [-q] [-where
> restricted_where|@filename]
>                [-spat xmin ymin xmax ymax] [-geomfield field] [-fid fid]
>                [-sql statement|@filename] [-dialect sql_dialect] [-al]
> [-rl] [-so] [-fields={YES/NO}]
>                [-geom={YES/NO/SUMMARY}] [[-oo NAME=VALUE] ...]
>                [-nomd] [-listmdd] [-mdd domain|`all`]*
>                [-nocount] [-noextent] [-wkt_format WKT1|WKT2|...]
>                datasource_name [layer [layer ...]]
> free(): invalid pointer
> Aborted (core dumped)

I can't reproduce this. I have:

% sudo dnf info gdal
Last metadata expiration check: 2:23:09 ago on Fri 11 Sep 2020 05:45:35 PM.
Installed Packages
Name         : gdal
Version      : 3.0.4
Release      : 2.fc32
Architecture : x86_64
Size         : 768 k
Source       : gdal-3.0.4-2.fc32.src.rpm
Repository   : @System
From repo    : fedora
Summary      : GIS file format library
URL          : http://www.gdal.org
License      : MIT
Description  : Geospatial Data Abstraction Library (GDAL/OGR) is a cross
platform
             : C++ translator library for raster and vector geospatial data
formats.
             : As a library, it presents a single abstract data model to
the calling
             : application for all supported formats. It also comes with a
variety of
             : useful commandline utilities for data translation and
processing.
             :
             : It provides the primary data access engine for many
applications.
             : GDAL/OGR is the most widely used geospatial data access
library.
> I tried reinstalling all components but still have the same problem.
> Bugzilla doesn't show any open bugs. Is anyone else experiencing problems
> with GDAL?

I installed GDAL 3.1.0dev-ecdba6e855, released 2020/01/08, from source on
Fedora 31 to /usr/local, then recently upgraded to Fedora 32, which added
gdal-3.0.4, but after upgrading to Fedora 32, I was getting:

% ldd /usr/bin/ogrinfo | grep libgdal
        libgdal.so.26 => /usr/local/lib/libgdal.so.26 (0x00007fde1863b000)

Do you have some older libgdal hanging around?

[Clifford Snow]

I have two libgdal
/usr/gdal30/lib/libgdal.so.26 -> libgdal.so.26.0.4
/usr/lib64/libgdal.so.26.0.4

Removing the gdal30 version solved the problem. Interesting - I grep gdal
from dnf list installed and gdal30 never showed up.

Thank you very much.

Clifford

On Fri, Sep 11, 2020 at 4:45 PM George N. White III 
wrote:
> On Fri, 11 Sep 2020 at 19:16, Clifford Snow 
> wrote:
> > I'm getting a core dump using any of the gdal utilities on F32. For
> > example running orginfo --help returns
> >
> > Usage: ogrinfo [--help-general] [-ro] [-q] [-where
> > restricted_where|@filename]
> >                [-spat xmin ymin xmax ymax] [-geomfield field] [-fid fid]
> >                [-sql statement|@filename] [-dialect sql_dialect] [-al]
> > [-rl] [-so] [-fields={YES/NO}]
> >                [-geom={YES/NO/SUMMARY}] [[-oo NAME=VALUE] ...]
> >                [-nomd] [-listmdd] [-mdd domain|`all`]*
> >                [-nocount] [-noextent] [-wkt_format WKT1|WKT2|...]
> >                datasource_name [layer [layer ...]]
> > free(): invalid pointer
> > Aborted (core dumped)
>
> I can't reproduce this. I have:
>
> % sudo dnf info gdal
> Last metadata expiration check: 2:23:09 ago on Fri 11 Sep 2020 05:45:35 PM.
> Installed Packages
> Name         : gdal
> Version      : 3.0.4
> Release      : 2.fc32
> Architecture : x86_64
> Size         : 768 k
> Source       : gdal-3.0.4-2.fc32.src.rpm
> Repository   : @System
> From repo    : fedora
> Summary      : GIS file format library
> URL          : http://www.gdal.org
> License      : MIT
> Description  : Geospatial Data Abstraction Library (GDAL/OGR) is a cross
> platform
>              : C++ translator library for raster and vector geospatial
> data formats.
>              : As a library, it presents a single abstract data model to
> the calling
>              : application for all supported formats. It also comes with a
> variety of
>              : useful commandline utilities for data translation and
> processing.
>              :
>              : It provides the primary data access engine for many
> applications.
>              : GDAL/OGR is the most widely used geospatial data access
> library.
> > I tried reinstalling all components but still have the same problem.
> > Bugzilla doesn't show any open bugs. Is anyone else experiencing problems
> > with GDAL?
>
> I installed GDAL 3.1.0dev-ecdba6e855, released 2020/01/08, from source on
> Fedora 31 to /usr/local, then recently upgraded to Fedora 32, which added
> gdal-3.0.4, but after upgrading to Fedora 32, I was getting:
>
> % ldd /usr/bin/ogrinfo | grep libgdal
>         libgdal.so.26 => /usr/local/lib/libgdal.so.26 (0x00007fde1863b000)
>
> Do you have some older libgdal hanging around?
>
> --
> George N. White III
>
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[Samuel Sieb]

On 9/11/20 5:05 PM, Clifford Snow wrote:
> I have two libgdal
> /usr/gdal30/lib/libgdal.so.26 -> libgdal.so.26.0.4
> /usr/lib64/libgdal.so.26.0.4
>
> Removing the gdal30 version solved the problem. Interesting - I grep 
> gdal from dnf list installed and gdal30 never showed up.

If that's where it was, it wasn't installed with dnf or it came from 
some other third party source..

[George N. White III]

On Fri, 11 Sep 2020 at 21:05, Clifford Snow  wrote:
> I have two libgdal
> /usr/gdal30/lib/libgdal.so.26 -> libgdal.so.26.0.4
> /usr/lib64/libgdal.so.26.0.4
>
> Removing the gdal30 version solved the problem. Interesting - I grep gdal
> from dnf list installed and gdal30 never showed up.

Maybe related to postgis:

https://gis.stackexchange.com/questions/349039/cannot-create-extension-postg...

Linux is starting to suffer from the Windows disease where apps install a
version of gdal configured with some feature that the distro left out.
I use software from the European Space Agency that installs private
versions of gdal2 and gdal3. It may be that /usr/gdal30 was meant to be
$APPDIR/usr/gdal30 but $APPDIR was lost.

Windows is much worse because the first dynamic library that gets loaded
will be used by other apps.  Windows GIS users may have more than
6 different gdal installations, so depending on which app was used first
different things break.

You should check /etc/ld.so.conf and the referenced files for undesirable
changes.
> Thank you very much.

Glad I could help.  I fear this sort of issue is becoming all too common on
linux.