What happened to R? I can install neither JGR not deducer anymore? Is it just me, or does this happen to everyone? I guess I really don't need these tools, but the idiot professor in the political science class I took instructed the students to be stupid and in need of these tools, so I forgot how to work without them.
Richard
On 13 October 2013 00:11, Richard Vickery richard.vickeryrv@gmail.com wrote:
What happened to R? I can install neither JGR not deducer anymore? Is it just me, or does this happen to everyone? I guess I really don't need these tools, but the idiot professor in the political science class I took instructed the students to be stupid and in need of these tools, so I forgot how to work without them.
Hi: At least on my F19 it's working OK sudo yum -y install R
RStudio need to be downloaded from RStudio's site, but once downloaded the .rpm you can install it with sudo yum -y install rstudio-0.97.551-i686.rpm
Maybe you could give us some extra details about what commands / output are you getting.
Kind regards
What are you having to do?
These are just GUIs from R, extremely useless from my point of view (by definition limited in abilities), but then I have been following R from version 0.1....
Ranjan
On Sat, 12 Oct 2013 20:11:20 -0700 Richard Vickery richard.vickeryrv@gmail.com wrote:
What happened to R? I can install neither JGR not deducer anymore? Is it just me, or does this happen to everyone? I guess I really don't need these tools, but the idiot professor in the political science class I took instructed the students to be stupid and in need of these tools, so I forgot how to work without them.
Richard
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I know they're useless, but the professor used them and, having known how to do things without then before class, I have since forgotten how to get by without them; and under the pressures of the current classes, it would be far easier using them until the Winter break.
Here's what I get when I go to install these:
install.packages()
--- Please select a CRAN mirror for use in this session --- Installing package into '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0' (as 'lib' is unspecified) also installing the dependencies 'png', 'iplots', 'JGR'
trying URL 'http://cran.stat.sfu.ca/src/contrib/png_0.1-6.tar.gz' Content type 'application/x-gzip' length 24919 bytes (24 Kb) opened URL ================================================== downloaded 24 Kb
trying URL 'http://cran.stat.sfu.ca/src/contrib/iplots_1.1-6.tar.gz' Content type 'application/x-gzip' length 336510 bytes (328 Kb) opened URL ================================================== downloaded 328 Kb
trying URL 'http://cran.stat.sfu.ca/src/contrib/JGR_1.7-15.tar.gz' Content type 'application/x-gzip' length 759394 bytes (741 Kb) opened URL ================================================== downloaded 741 Kb
trying URL 'http://cran.stat.sfu.ca/src/contrib/Deducer_0.7-6.tar.gz' Content type 'application/x-gzip' length 5941779 bytes (5.7 Mb) opened URL ================================================== downloaded 5.7 Mb
* installing *source* package 'png' ... ** package 'png' successfully unpacked and MD5 sums checked ** libs gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include `libpng-config --cflags` -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c read.c -o read.o /bin/sh: libpng-config: command not found read.c:3:17: fatal error: png.h: No such file or directory #include <png.h> ^ compilation terminated. make: *** [read.o] Error 1 ERROR: compilation failed for package 'png' * removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/png' ERROR: dependency 'png' is not available for package 'iplots' * removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/iplots' ERROR: dependency 'iplots' is not available for package 'JGR' * removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/JGR' ERROR: dependency 'JGR' is not available for package 'Deducer' * removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/Deducer'
The downloaded source packages are in '/tmp/Rtmpx96KAX/downloaded_packages' Warning messages: 1: In install.packages() : installation of package 'png' had non-zero exit status 2: In install.packages() : installation of package 'iplots' had non-zero exit status 3: In install.packages() : installation of package 'JGR' had non-zero exit status 4: In install.packages() : installation of package 'Deducer' had non-zero exit status
What did/am I do/ing wrong?
On Mon, Oct 14, 2013 at 10:03 AM, Ranjan Maitra maitra.mbox.ignored@inbox.com wrote:
What are you having to do?
These are just GUIs from R, extremely useless from my point of view (by definition limited in abilities), but then I have been following R from version 0.1....
Ranjan
On Sat, 12 Oct 2013 20:11:20 -0700 Richard Vickery richard.vickeryrv@gmail.com wrote:
What happened to R? I can install neither JGR not deducer anymore? Is it just me, or does this happen to everyone? I guess I really don't need these tools, but the idiot professor in the political science class I took instructed the students to be stupid and in need of these tools, so I forgot how to work without them.
Richard
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Looks to me like you're missing the development headers for libpng.
----- Original Message ----- | I know they're useless, but the professor used them and, having known | how to do things without then before class, I have since forgotten | how | to get by without them; and under the pressures of the current | classes, it would be far easier using them until the Winter break. | | Here's what I get when I go to install these: | | > install.packages() | --- Please select a CRAN mirror for use in this session --- | Installing package into | '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0' | (as 'lib' is unspecified) | also installing the dependencies 'png', 'iplots', 'JGR' | | trying URL 'http://cran.stat.sfu.ca/src/contrib/png_0.1-6.tar.gz' | Content type 'application/x-gzip' length 24919 bytes (24 Kb) | opened URL | ================================================== | downloaded 24 Kb | | trying URL 'http://cran.stat.sfu.ca/src/contrib/iplots_1.1-6.tar.gz' | Content type 'application/x-gzip' length 336510 bytes (328 Kb) | opened URL | ================================================== | downloaded 328 Kb | | trying URL 'http://cran.stat.sfu.ca/src/contrib/JGR_1.7-15.tar.gz' | Content type 'application/x-gzip' length 759394 bytes (741 Kb) | opened URL | ================================================== | downloaded 741 Kb | | trying URL 'http://cran.stat.sfu.ca/src/contrib/Deducer_0.7-6.tar.gz' | Content type 'application/x-gzip' length 5941779 bytes (5.7 Mb) | opened URL | ================================================== | downloaded 5.7 Mb | | * installing *source* package 'png' ... | ** package 'png' successfully unpacked and MD5 sums checked | ** libs | gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include | `libpng-config --cflags` -fpic -O2 -g -pipe -Wall | -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector | --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic | -c read.c -o read.o | /bin/sh: libpng-config: command not found | read.c:3:17: fatal error: png.h: No such file or directory | #include <png.h> | ^ | compilation terminated. | make: *** [read.o] Error 1 | ERROR: compilation failed for package 'png' | * removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/png' | ERROR: dependency 'png' is not available for package 'iplots' | * removing | '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/iplots' | ERROR: dependency 'iplots' is not available for package 'JGR' | * removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/JGR' | ERROR: dependency 'JGR' is not available for package 'Deducer' | * removing | '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/Deducer' | | The downloaded source packages are in | '/tmp/Rtmpx96KAX/downloaded_packages' | Warning messages: | 1: In install.packages() : | installation of package 'png' had non-zero exit status | 2: In install.packages() : | installation of package 'iplots' had non-zero exit status | 3: In install.packages() : | installation of package 'JGR' had non-zero exit status | 4: In install.packages() : | installation of package 'Deducer' had non-zero exit status | | What did/am I do/ing wrong? | | On Mon, Oct 14, 2013 at 10:03 AM, Ranjan Maitra | maitra.mbox.ignored@inbox.com wrote: | > What are you having to do? | > | > These are just GUIs from R, extremely useless from my point of view | > (by definition limited in abilities), but then I have been | > following R | > from version 0.1.... | > | > Ranjan | > | > | > | > On Sat, 12 Oct 2013 20:11:20 -0700 Richard Vickery | > richard.vickeryrv@gmail.com wrote: | > | >> What happened to R? I can install neither JGR not deducer anymore? | >> Is | >> it just me, or does this happen to everyone? I guess I really | >> don't | >> need these tools, but the idiot professor in the political science | >> class I took instructed the students to be stupid and in need of | >> these | >> tools, so I forgot how to work without them. | >> | >> Richard | >> -- | >> users mailing list | >> users@lists.fedoraproject.org | >> To unsubscribe or change subscription options: | >> https://admin.fedoraproject.org/mailman/listinfo/users | >> Fedora Code of Conduct: http://fedoraproject.org/code-of-conduct | >> Guidelines: http://fedoraproject.org/wiki/Mailing_list_guidelines | >> Have a question? Ask away: http://ask.fedoraproject.org | > | > | > -- | > Important Notice: This mailbox is ignored: e-mails are set to be | > deleted on receipt. Please respond to the mailing list if | > appropriate. | > For those needing to send personal or professional e-mail, please | > use | > appropriate addresses. | > | > ____________________________________________________________ | > FREE 3D EARTH SCREENSAVER - Watch the Earth right on your desktop! | > Check it out at http://www.inbox.com/earth | > | > | > -- | > users mailing list | > users@lists.fedoraproject.org | > To unsubscribe or change subscription options: | > https://admin.fedoraproject.org/mailman/listinfo/users | > Fedora Code of Conduct: http://fedoraproject.org/code-of-conduct | > Guidelines: http://fedoraproject.org/wiki/Mailing_list_guidelines | > Have a question? Ask away: http://ask.fedoraproject.org | -- | users mailing list | users@lists.fedoraproject.org | To unsubscribe or change subscription options: | https://admin.fedoraproject.org/mailman/listinfo/users | Fedora Code of Conduct: http://fedoraproject.org/code-of-conduct | Guidelines: http://fedoraproject.org/wiki/Mailing_list_guidelines | Have a question? Ask away: http://ask.fedoraproject.org |
OK, you are missing some packages (not from R):
sudo yum provides */libpng-config
yields:
2:libpng-devel-1.5.13-2.fc19.i686 : Development tools for programs to manipulate : PNG image format files Repo : fedora Matched from: Filename : /usr/bin/libpng-config
So install:
sudo yum install libpng-devel
I suspect this takes care of the other error also.
The professor needs to be asked what use this sort of "learning" how to use a package is? Monkey-see-monkey-do is all one will get.....throw in a non-standard scenario and what will the students (or the professor himself) do?
Nevertheless, HTH!
Ranjan
On Mon, 14 Oct 2013 10:27:19 -0700 Richard Vickery richard.vickeryrv@gmail.com wrote:
I know they're useless, but the professor used them and, having known how to do things without then before class, I have since forgotten how to get by without them; and under the pressures of the current classes, it would be far easier using them until the Winter break.
Here's what I get when I go to install these:
install.packages()
--- Please select a CRAN mirror for use in this session --- Installing package into '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0' (as 'lib' is unspecified) also installing the dependencies 'png', 'iplots', 'JGR'
trying URL 'http://cran.stat.sfu.ca/src/contrib/png_0.1-6.tar.gz' Content type 'application/x-gzip' length 24919 bytes (24 Kb) opened URL ================================================== downloaded 24 Kb
trying URL 'http://cran.stat.sfu.ca/src/contrib/iplots_1.1-6.tar.gz' Content type 'application/x-gzip' length 336510 bytes (328 Kb) opened URL ================================================== downloaded 328 Kb
trying URL 'http://cran.stat.sfu.ca/src/contrib/JGR_1.7-15.tar.gz' Content type 'application/x-gzip' length 759394 bytes (741 Kb) opened URL ================================================== downloaded 741 Kb
trying URL 'http://cran.stat.sfu.ca/src/contrib/Deducer_0.7-6.tar.gz' Content type 'application/x-gzip' length 5941779 bytes (5.7 Mb) opened URL ================================================== downloaded 5.7 Mb
- installing *source* package 'png' ...
** package 'png' successfully unpacked and MD5 sums checked ** libs gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include `libpng-config --cflags` -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c read.c -o read.o /bin/sh: libpng-config: command not found read.c:3:17: fatal error: png.h: No such file or directory #include <png.h> ^ compilation terminated. make: *** [read.o] Error 1 ERROR: compilation failed for package 'png'
- removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/png'
ERROR: dependency 'png' is not available for package 'iplots'
- removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/iplots'
ERROR: dependency 'iplots' is not available for package 'JGR'
- removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/JGR'
ERROR: dependency 'JGR' is not available for package 'Deducer'
- removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/Deducer'
The downloaded source packages are in '/tmp/Rtmpx96KAX/downloaded_packages' Warning messages: 1: In install.packages() : installation of package 'png' had non-zero exit status 2: In install.packages() : installation of package 'iplots' had non-zero exit status 3: In install.packages() : installation of package 'JGR' had non-zero exit status 4: In install.packages() : installation of package 'Deducer' had non-zero exit status
What did/am I do/ing wrong?
On Mon, Oct 14, 2013 at 10:03 AM, Ranjan Maitra maitra.mbox.ignored@inbox.com wrote:
What are you having to do?
These are just GUIs from R, extremely useless from my point of view (by definition limited in abilities), but then I have been following R from version 0.1....
Ranjan
On Sat, 12 Oct 2013 20:11:20 -0700 Richard Vickery richard.vickeryrv@gmail.com wrote:
What happened to R? I can install neither JGR not deducer anymore? Is it just me, or does this happen to everyone? I guess I really don't need these tools, but the idiot professor in the political science class I took instructed the students to be stupid and in need of these tools, so I forgot how to work without them.
Richard
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On 10/16/13 05:37, Ranjan Maitra wrote:
OK, you are missing some packages (not from R):
sudo yum provides */libpng-config
yields:
2:libpng-devel-1.5.13-2.fc19.i686 : Development tools for programs to manipulate : PNG image format files Repo : fedora Matched from: Filename : /usr/bin/libpng-config
So install:
sudo yum install libpng-devel
<SNIP>
I just tried the command
sudo yum provides */libpng-config
to see what would happen, not being familiar with "yum provides". I got:
sudo: No match.
Because of that "*" I guess. So I then tried enclosing "*/libpng-config" in quotes:
sudo yum provides "*/libpng-config"
And *that* seemed to work as advertised.
Things like that can be very off-putting to us bunnies. I managed to figure out what was the right thing to do in this case, but I might well not have managed.
Please, people: When you give advice, make sure you get the little details right. Knowledgeable types and gurus can readily spot and fix minor infelicities. But to us bunnies a minor infelicity can be completely bewildering. Test your code before sending!
cheers,
Rolf Turner
On 10/15/2013 01:07 PM, Rolf Turner wrote:
Please, people: When you give advice, make sure you get the little details right. Knowledgeable types and gurus can readily spot and fix minor infelicities. But to us bunnies a minor infelicity can be completely bewildering. Test your code before sending!
FYI, root isn't needed for such queries. I used this:
yum provides */libpng-config
with no quotes, as my normal, unprivileged user and got the answer with no trouble.
On 10/16/13 09:20, Joe Zeff wrote:
On 10/15/2013 01:07 PM, Rolf Turner wrote:
Please, people: When you give advice, make sure you get the little details right. Knowledgeable types and gurus can readily spot and fix minor infelicities. But to us bunnies a minor infelicity can be completely bewildering. Test your code before sending!
FYI, root isn't needed for such queries.
That makes sense!
I used this:
yum provides */libpng-config
with no quotes, as my normal, unprivileged user and got the answer with no trouble.
Hmm. I tried that just now and got the "No match." again. WTF? Ahhhhh, I think I see what's happening. I am using (due to my personal peculiarities --- :-) ) tcsh. I expect that you, like most people, are using bash. Tried it under bash, and bingo, it worked.
Mildly fascinating that there is this difference in the treatment of wild cards between bash and tcsh.
Anyhow, thanks for the enlightenment.
cheers,
Rolf Turner
On Wed, 16 Oct 2013 09:28:49 +1300 Rolf Turner r.turner@auckland.ac.nz wrote:
On 10/16/13 09:20, Joe Zeff wrote:
On 10/15/2013 01:07 PM, Rolf Turner wrote:
Please, people: When you give advice, make sure you get the little details right. Knowledgeable types and gurus can readily spot and fix minor infelicities. But to us bunnies a minor infelicity can be completely bewildering. Test your code before sending!
FYI, root isn't needed for such queries.
That makes sense!I used this:
yum provides */libpng-config
with no quotes, as my normal, unprivileged user and got the answer with no trouble.
Hmm. I tried that just now and got the "No match." again. WTF?Ahhhhh, I think I see what's happening. I am using (due to my personal peculiarities --- :-) ) tcsh. I expect that you, like most people, are using bash. Tried it under bash, and bingo, it worked.
Mildly fascinating that there is this difference in the treatmentof wild cards between bash and tcsh.
My advice worked as stated and was tried out before I sent it: I have not used tcsh so can not comment.
Btw, yes, you do not need sudo permission, but yum will look into the repos all over again (in case you update -- and do so as root -- frequently in which case it will look into the cache also and results will be quicker). My experience and self-explanation.
HTH, Ranjan
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On Tue, Oct 15, 2013 at 9:37 AM, Ranjan Maitra maitra.mbox.ignored@inbox.com wrote:
OK, you are missing some packages (not from R):
sudo yum provides */libpng-config
yields:
2:libpng-devel-1.5.13-2.fc19.i686 : Development tools for programs to manipulate : PNG image format files Repo : fedora Matched from: Filename : /usr/bin/libpng-config
So install:
sudo yum install libpng-devel
I suspect this takes care of the other error also.
The professor needs to be asked what use this sort of "learning" how to use a package is? Monkey-see-monkey-do is all one will get.....throw in a non-standard scenario and what will the students (or the professor himself) do?
Nevertheless, HTH!
Ranjan
On Mon, 14 Oct 2013 10:27:19 -0700 Richard Vickery richard.vickeryrv@gmail.com wrote:
I know they're useless, but the professor used them and, having known how to do things without then before class, I have since forgotten how to get by without them; and under the pressures of the current classes, it would be far easier using them until the Winter break.
Here's what I get when I go to install these:
install.packages()
--- Please select a CRAN mirror for use in this session --- Installing package into '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0' (as 'lib' is unspecified) also installing the dependencies 'png', 'iplots', 'JGR'
trying URL 'http://cran.stat.sfu.ca/src/contrib/png_0.1-6.tar.gz' Content type 'application/x-gzip' length 24919 bytes (24 Kb) opened URL ================================================== downloaded 24 Kb
trying URL 'http://cran.stat.sfu.ca/src/contrib/iplots_1.1-6.tar.gz' Content type 'application/x-gzip' length 336510 bytes (328 Kb) opened URL ================================================== downloaded 328 Kb
trying URL 'http://cran.stat.sfu.ca/src/contrib/JGR_1.7-15.tar.gz' Content type 'application/x-gzip' length 759394 bytes (741 Kb) opened URL ================================================== downloaded 741 Kb
trying URL 'http://cran.stat.sfu.ca/src/contrib/Deducer_0.7-6.tar.gz' Content type 'application/x-gzip' length 5941779 bytes (5.7 Mb) opened URL ================================================== downloaded 5.7 Mb
- installing *source* package 'png' ...
** package 'png' successfully unpacked and MD5 sums checked ** libs gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include `libpng-config --cflags` -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c read.c -o read.o /bin/sh: libpng-config: command not found read.c:3:17: fatal error: png.h: No such file or directory #include <png.h> ^ compilation terminated. make: *** [read.o] Error 1 ERROR: compilation failed for package 'png'
- removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/png'
ERROR: dependency 'png' is not available for package 'iplots'
- removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/iplots'
ERROR: dependency 'iplots' is not available for package 'JGR'
- removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/JGR'
ERROR: dependency 'JGR' is not available for package 'Deducer'
- removing '/home/richard/R/x86_64-redhat-linux-gnu-library/3.0/Deducer'
The downloaded source packages are in '/tmp/Rtmpx96KAX/downloaded_packages' Warning messages: 1: In install.packages() : installation of package 'png' had non-zero exit status 2: In install.packages() : installation of package 'iplots' had non-zero exit status 3: In install.packages() : installation of package 'JGR' had non-zero exit status 4: In install.packages() : installation of package 'Deducer' had non-zero exit status
What did/am I do/ing wrong?
On Mon, Oct 14, 2013 at 10:03 AM, Ranjan Maitra maitra.mbox.ignored@inbox.com wrote:
What are you having to do?
These are just GUIs from R, extremely useless from my point of view (by definition limited in abilities), but then I have been following R from version 0.1....
Ranjan
On Sat, 12 Oct 2013 20:11:20 -0700 Richard Vickery richard.vickeryrv@gmail.com wrote:
What happened to R? I can install neither JGR not deducer anymore? Is it just me, or does this happen to everyone? I guess I really don't need these tools, but the idiot professor in the political science class I took instructed the students to be stupid and in need of these tools, so I forgot how to work without them.
Richard
users mailing list users@lists.fedoraproject.org To unsubscribe or change subscription options: https://admin.fedoraproject.org/mailman/listinfo/users Fedora Code of Conduct: http://fedoraproject.org/code-of-conduct Guidelines: http://fedoraproject.org/wiki/Mailing_list_guidelines Have a question? Ask away: http://ask.fedoraproject.org
Thanks so much!
-
Carlos "casep" Sepulveda -
James A. Peltier -
Joe Zeff -
Ranjan Maitra -
Richard Vickery -
Rolf Turner