scilab build failure C++ ABI?
Orion Poplawski
orion at cora.nwra.com
Sun May 17 21:52:21 UTC 2015
Trying to rebuild scilab with the new hdf5 I get:
libtool: link: g++ -DNDEBUG -fno-stack-protector -msse -O2 -g -pipe
-Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
-fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches
-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m32 -march=i686
-mtune=atom -fasynchronous-unwind-tables -Wl,-z -Wl,relro
-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--no-as-needed -o
.libs/scilab-bin modules/startup/src/c/scilab_bin-mainscic.o
./modules/.libs/libscilab.so
-L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.45-38.b14.fc23.i386/jre/lib/i386
-L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.45-38.b14.fc23.i386/jre/lib/i386/server
-L/lib /builddir/build/BUILD/scilab-5.5.2/modules/gui/.libs/libscigui.so
/builddir/build/BUILD/scilab-5.5.2/modules/renderer/.libs/libscirenderer.so
/builddir/build/BUILD/scilab-5.5.2/modules/graphics/.libs/libscigraphics.so
/builddir/build/BUILD/scilab-5.5.2/modules/graphic_export/.libs/libscigraphic_export.so
/builddir/build/BUILD/scilab-5.5.2/modules/console/.libs/libsciconsole.so /builddir/build/BUILD/scilab-5.5.2/modules/action_binding/.libs/libsciaction_binding.so
/builddir/build/BUILD/scilab-5.5.2/modules/graphic_objects/.libs/libscigraphic_objects.so
/builddir/build/BUILD/scilab-5.5.2/modules/scinotes/.libs/libsciscinotes.so
/builddir/build/BUILD/scilab-5.5.2/modules/ui_data/.libs/libsciui_data.so /builddir/build/BUILD/scilab-5.5.2/modules/history_browser/.libs/libscihistory_browser.so
/builddir/build/BUILD/scilab-5.5.2/modules/tclsci/.libs/libscitclsci.so
-ltk8.6 -ltcl8.6
/builddir/build/BUILD/scilab-5.5.2/modules/preferences/.libs/libscipreferences.so
/builddir/build/BUILD/scilab-5.5.2/modules/external_objects_java/.libs/libsciexternal_objects_java.so
/builddir/build/BUILD/scilab-5.5.2/modules/helptools/.libs/libscihelptools.so
/builddir/build/BUILD/scilab-5.5.2/modules/types/.libs/libscitypes.so
/builddir/build/BUILD/scilab-5.5.2/modules/commons/.libs/libscicommons.so /builddir/build/BUILD/scilab-5.5.2/modules/jvm/.libs/libscijvm.so
/builddir/build/BUILD/scilab-5.5.2/modules/.libs/libscilab-cli.so
./modules/.libs/libscilab-cli.so -lcurl
/builddir/build/BUILD/scilab-5.5.2/modules/functions/.libs/libscifunctions.so
/builddir/build/BUILD/scilab-5.5.2/modules/call_scilab/.libs/libscicall_scilab.so
/builddir/build/BUILD/scilab-5.5.2/modules/localization/.libs/libscilocalization.so
/builddir/build/BUILD/scilab-5.5.2/modules/special_functions/.libs/libscispecial_functions.so
/builddir/build/BUILD/scilab-5.5.2/modules/completion/.libs/libscicompletion.so
/builddir/build/BUILD/scilab-5.5.2/modules/history_manager/.libs/libscihistory_manager.so
-lpcreposix -lpcre
/builddir/build/BUILD/scilab-5.5.2/modules/hdf5/.libs/libscihdf5.so
-lhdf5 -lhdf5_hl -lfftw3
/builddir/build/BUILD/scilab-5.5.2/modules/statistics/.libs/libscistatistics.so
/builddir/build/BUILD/scilab-5.5.2/modules/xml/.libs/libscixml.so
/builddir/build/BUILD/scilab-5.5.2/modules/external_objects/.libs/libsciexternal_objects.so
/builddir/build/BUILD/scilab-5.5.2/modules/preferences/.libs/libscipreferences-cli.so
/builddir/build/BUILD/scilab-5.5.2/modules/gui/.libs/libscigui-disable.so /builddir/build/BUILD/scilab-5.5.2/modules/graphics/.libs/libscigraphics-disable.so
/builddir/build/BUILD/scilab-5.5.2/modules/graphic_export/.libs/libscigraphic_export-disable.so
/builddir/build/BUILD/scilab-5.5.2/modules/action_binding/.libs/libsciaction_binding-disable.so
/builddir/build/BUILD/scilab-5.5.2/modules/jvm/.libs/libscijvm-disable.so /builddir/build/BUILD/scilab-5.5.2/modules/xcos/.libs/libscixcos-disable.so
/builddir/build/BUILD/scilab-5.5.2/modules/graphic_objects/.libs/libscigraphic_objects-disable.so
/builddir/build/BUILD/scilab-5.5.2/modules/scinotes/.libs/libsciscinotes-disable.so
/builddir/build/BUILD/scilab-5.5.2/modules/ui_data/.libs/libsciui_data-disable.so
/builddir/build/BUILD/scilab-5.5.2/modules/history_browser/.libs/libscihistory_browser-disable.so
/builddir/build/BUILD/scilab-5.5.2/modules/commons/.libs/libscicommons-disable.so
-llapack -lblas -L/usr/lib/gcc/i686-redhat-linux/5.1.1
-L/usr/lib/gcc/i686-redhat-linux/5.1.1/../../.. -lgfortran -lquadmath
./modules/console/.libs/libsciconsole.so
/builddir/build/BUILD/scilab-5.5.2/modules/console/.libs/libsciconsole-minimal.so
./modules/jvm/.libs/libscijvm.so -lxml2 -lz -ljava -lverify -ljvm
./modules/commons/.libs/libscicommons.so -lstdc++ -lpthread -ldl
-lcurses -lm -pthread -Wl,-rpath -Wl,/usr/lib/scilab
/builddir/build/BUILD/scilab-5.5.2/modules/hdf5/.libs/libscihdf5.so:
undefined reference to
`org_modules_hdf5::H5Object::getCompletePath[abi:cxx11]() const'
I don't understand this. libscihdf5.so is a scilab library built
earlier so I can't be out of sync:
libtool: link: g++ -fPIC -DPIC -shared -nostdlib
/usr/lib/gcc/i686-redhat-linux/5.1.1/../../../crti.o
/usr/lib/gcc/i686-redhat-linux/5.1.1/crtbeginS.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_export_to_hdf5.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_import_from_hdf5.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_is_hdf5_file.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_listvar_in_hdf5.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5dump.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5open.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5close.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5read.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5ls.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_percent_H5Object_p.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_percent_H5Object_e.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5group.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5rm.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5dataset.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5write.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5attr.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5ln.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5readattr.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5flush.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5cp.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5isfoo.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5mount.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5umount.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5mv.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5get.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5label.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_h5exists.o
sci_gateway/cpp/.libs/libscihdf5_la-sci_percent_H5Object_fieldnames.o
sci_gateway/c/.libs/libscihdf5_la-gw_hdf5.o -Wl,--whole-archive
./.libs/libscihdf5-algo.a -Wl,--no-whole-archive -lhdf5 -lhdf5_hl
-lpthread -ldl -lcurses -L/usr/lib/gcc/i686-redhat-linux/5.1.1
-L/usr/lib/gcc/i686-redhat-linux/5.1.1/../../.. -lm -lc -lgcc_s
/usr/lib/gcc/i686-redhat-linux/5.1.1/crtendS.o
/usr/lib/gcc/i686-redhat-linux/5.1.1/../../../crtn.o
-specs=/usr/lib/rpm/redhat/redhat-hardened-ld -msse -O2 -m32 -march=i686
-mtune=atom -Wl,-z -Wl,relro -Wl,--no-as-needed -Wl,-soname
-Wl,libscihdf5.so.5 -o .libs/libscihdf5.so.5.5.2
and it's linked into other libraries in the build okay. What else could
be going on?
--
Orion Poplawski
Technical Manager 303-415-9701 x222
NWRA/CoRA Division FAX: 303-415-9702
3380 Mitchell Lane orion at cora.nwra.com
Boulder, CO 80301 http://www.cora.nwra.com
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