[release-notes/f16] Fixed ulink problems

Eric Christensen sparks at fedoraproject.org
Thu Sep 29 20:37:08 UTC 2011


commit 08fb4533bc44db789143938063418898dc758895
Author: Eric 'Sparks' Christensen <sparks at fedoraproject.org>
Date:   Thu Sep 29 16:15:00 2011 -0400

    Fixed ulink problems

 en-US/Amateur_Radio.xml            |    2 +-
 en-US/Cloud.xml                    |    2 +-
 en-US/Development_Tools.xml        |   54 +++++++++--------------------------
 en-US/Multimedia.xml               |    4 +--
 en-US/Networking.xml               |   16 ++--------
 en-US/Productivity.xml             |   28 ++++--------------
 en-US/Scientific_and_Technical.xml |   24 ++++------------
 7 files changed, 34 insertions(+), 96 deletions(-)
---
diff --git a/en-US/Amateur_Radio.xml b/en-US/Amateur_Radio.xml
index e660c70..958624b 100644
--- a/en-US/Amateur_Radio.xml
+++ b/en-US/Amateur_Radio.xml
@@ -62,7 +62,7 @@
       
     </para>
     <para>
-      The complete upstream changelog is available at <ulink url="http://hamlib.sourceforge.net/NEWS">http://hamlib.sourceforge.net/NEWS</ulink> and there is more general information on the project's wiki at <ulink url="http://www.hamlib.org.">http://www.hamlib.org.</ulink>
+      The complete upstream changelog is available at <ulink url="http://hamlib.sourceforge.net/NEWS">http://hamlib.sourceforge.net/NEWS</ulink> and there is more general information on the project's wiki at <ulink url="http://www.hamlib.org">http://www.hamlib.org</ulink>.
       
     </para>
   </section>
diff --git a/en-US/Cloud.xml b/en-US/Cloud.xml
index 7a138ab..76ba566 100644
--- a/en-US/Cloud.xml
+++ b/en-US/Cloud.xml
@@ -22,7 +22,7 @@
     <title>Condor Cloud</title>
     
     <para>
-      Condor Cloud is an Infrastructure as a Service (IaaS) cloud implementation.  It allows you to create as many VMs from an image or images as you wish, distributing them across a pool of configured hosts.  The user interface is the Deltacloud API (<ulink url="http://deltacloud.org).">http://deltacloud.org).</ulink>  The backend is implemented using Condor (<ulink url="http://www.cs.wisc.edu/condor/)">http://www.cs.wisc.edu/condor/)</ulink> which in turn starts VMs using libvirt and KVM. 
+      Condor Cloud is an Infrastructure as a Service (IaaS) cloud implementation.  It allows you to create as many VMs from an image or images as you wish, distributing them across a pool of configured hosts.  The user interface is the Deltacloud API (<ulink url="http://deltacloud.org">http://deltacloud.org</ulink>).  The backend is implemented using Condor (<ulink url="http://www.cs.wisc.edu/condor/">http://www.cs.wisc.edu/condor/</ulink>) which in turn starts VMs using libvirt and KVM. 
     </para>
   </section>
   <section>
diff --git a/en-US/Development_Tools.xml b/en-US/Development_Tools.xml
index 9e9347f..121d90e 100644
--- a/en-US/Development_Tools.xml
+++ b/en-US/Development_Tools.xml
@@ -42,9 +42,7 @@
     <title>autoconf-archive</title>
     
     <para>
-      The GNU Autoconf Archive is a collection of more than 450 macros for GNU Autoconf that have been contributed as free software by friendly supporters of the cause from all over the Internet.  Version 2011.04.12 is now included in Fedora 16.  Refer to <ulink url="http://www.gnu.org/software/autoconf-archive/index.html">
-      <ulink url="http://www.gnu.org/software/autoconf-archive/index.html">http://www.gnu.org/software/autoconf-archive/index.html</ulink>
-      </ulink> for the project details. 
+      The GNU Autoconf Archive is a collection of more than 450 macros for GNU Autoconf that have been contributed as free software by friendly supporters of the cause from all over the Internet.  Version 2011.04.12 is now included in Fedora 16.  Refer to <ulink url="http://www.gnu.org/software/autoconf-archive/index.html">http://www.gnu.org/software/autoconf-archive/index.html</ulink> for the project details. 
     </para>
   </section>
   <section>
@@ -91,9 +89,7 @@
     
     <para>
 
-      <package>btparser</package> is a backtrace parser and analyzer, which works with backtraces produced by the GNU Project Debugger. It can parse a text file with a backtrace to a tree of C structures, allowing the developer to analyze the threads and frames of the backtrace and work with them.  The project's trac page may be found at <ulink url="https://fedorahosted.org/btparser/">
-      <ulink url="https://fedorahosted.org/btparser/">https://fedorahosted.org/btparser/</ulink>
-      </ulink>.
+      <package>btparser</package> is a backtrace parser and analyzer, which works with backtraces produced by the GNU Project Debugger. It can parse a text file with a backtrace to a tree of C structures, allowing the developer to analyze the threads and frames of the backtrace and work with them.  The project's trac page may be found at <ulink url="https://fedorahosted.org/btparser/">https://fedorahosted.org/btparser/</ulink>.
     </para>
   </section>
   <section>
@@ -105,9 +101,7 @@
     </para>
     
     <para>
-      The initial goal is to make an in-place on-screen keyboard suitable for people who can use a mouse but not a hardware keyboard. This on-screen keyboard may also be useful for touch screen or tablet users.  <ulink url="http://live.gnome.org/Caribou">
-      <ulink url="http://live.gnome.org/Caribou">http://live.gnome.org/Caribou</ulink>
-      </ulink>. 
+      The initial goal is to make an in-place on-screen keyboard suitable for people who can use a mouse but not a hardware keyboard. This on-screen keyboard may also be useful for touch screen or tablet users.  <ulink url="http://live.gnome.org/Caribou">http://live.gnome.org/Caribou</ulink>. 
     </para>
   </section>
   <section>
@@ -115,9 +109,7 @@
     <title>cddlib-static</title>
     
     <para>
-      cddlib is a C library implementing of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron. <ulink url="http://www.ifor.math.ethz.ch/~fukuda/cdd_home/">
-      <ulink url="http://www.ifor.math.ethz.ch/~fukuda/cdd_home/">http://www.ifor.math.ethz.ch/~fukuda/cdd_home/</ulink>
-      </ulink>. 
+      cddlib is a C library implementing of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron.  <ulink url="http://www.ifor.math.ethz.ch/~fukuda/cdd_home/">http://www.ifor.math.ethz.ch/~fukuda/cdd_home/</ulink>. 
     </para>
   </section>
   <section>
@@ -174,9 +166,7 @@
       </listitem>
     </itemizedlist>
     <para>
-      More information may be found at <ulink url="http://ecb.sourceforge.net/">
-      <ulink url="http://ecb.sourceforge.net/">http://ecb.sourceforge.net/</ulink>
-      </ulink>. 
+      More information may be found at <ulink url="http://ecb.sourceforge.net/">http://ecb.sourceforge.net/</ulink>. 
     </para>
   </section>
   <section>
@@ -185,9 +175,7 @@
     
     <para>
 
-      <package>frama-c</package> is a C source code analysis tool, which may be used standalone, or integrated with Emacs.  <emphasis>frama-c</emphasis> includes a source browser, and can calculate simple metrics such as sloc, call depth and cyclomatic complexity for a project.  It can also generate simple call graphs.  Various assertions about the code may be tested, and the code may be validated against a number of theorems.  <emphasis>frama-c</emphasis> accepts user written plugins for additional custom analyses.  More information on <emphasis>frama-c</emphasis> may be found at <ulink url="http://frama-c.com/">
-      <ulink url="http://frama-c.com/">http://frama-c.com/</ulink>
-      </ulink>.
+      <package>frama-c</package> is a C source code analysis tool, which may be used standalone, or integrated with Emacs.  <emphasis>frama-c</emphasis> includes a source browser, and can calculate simple metrics such as sloc, call depth and cyclomatic complexity for a project.  It can also generate simple call graphs.  Various assertions about the code may be tested, and the code may be validated against a number of theorems.  <emphasis>frama-c</emphasis> accepts user written plugins for additional custom analyses.  More information on <emphasis>frama-c</emphasis> may be found at <ulink url="http://frama-c.com/">http://frama-c.com/</ulink>.
     </para>
   </section>
   <section>
@@ -195,7 +183,7 @@
     <title>GCC Python Plugins </title>
     
     <para>
-      GCC plugins that embed  <package>Python 2</package> and <emphasis>Python 3</emphasis>  are now available, enabling developers to more easily hook into GCC's inner workings (e.g. to add new compiler warnings). See the <ulink url="http://fedoraproject.org/w/index.php?title=Features/GccPythonPlugin"> Feature Page </ulink> for more details.
+      GCC plugins that embed  <package>Python 2</package> and <emphasis>Python 3</emphasis>  are now available, enabling developers to more easily hook into GCC's inner workings (e.g. to add new compiler warnings). See the <ulink url="http://fedoraproject.org/w/index.php?title=Features/GccPythonPlugin">Feature Page</ulink> for more details.
     </para>
   </section>
   <section>
@@ -204,9 +192,7 @@
     
     <para>
 
-      <package>jruby</package> is a Java implementation of the Ruby language, offering Ruby programmers the platform independence of Java.  Version 1.6.2 of <emphasis>jruby</emphasis> is new to Fedora 16.  The project page may be found at <ulink url="http://jruby.org">
-      <ulink url="http://jruby.org">http://jruby.org</ulink>
-      </ulink>.
+      <package>jruby</package> is a Java implementation of the Ruby language, offering Ruby programmers the platform independence of Java.  Version 1.6.2 of <emphasis>jruby</emphasis> is new to Fedora 16.  The project page may be found at <ulink url="http://jruby.org">http://jruby.org</ulink>.
     </para>
   </section>
   <section>
@@ -215,9 +201,7 @@
     
     <para>
 
-      <package>libpipeline</package> provides a set of functions for manipulating pipelines of subprocesses in a flexible and convenient way. <ulink url="http://libpipeline.nongnu.org/">
-      <ulink url="http://libpipeline.nongnu.org/">http://libpipeline.nongnu.org/</ulink>
-      </ulink>.
+      <package>libpipeline</package> provides a set of functions for manipulating pipelines of subprocesses in a flexible and convenient way.  <ulink url="http://libpipeline.nongnu.org/">http://libpipeline.nongnu.org/</ulink>.
     </para>
   </section>
   <section>
@@ -226,9 +210,7 @@
     
     <para>
 
-      <package>osm-gps-map-devel</package>, a Gtk+ widget (and Python bindings) that when given GPS co-ordinates, draws a GPS track, and points of interest on a moving map display. Downloads map data from a number of websites, including openstreetmap.org. <ulink url="http://nzjrs.github.com/osm-gps-map/">
-      <ulink url="http://nzjrs.github.com/osm-gps-map/">http://nzjrs.github.com/osm-gps-map/</ulink>
-      </ulink>.
+      <package>osm-gps-map-devel</package>, a Gtk+ widget (and Python bindings) that when given GPS co-ordinates, draws a GPS track, and points of interest on a moving map display. Downloads map data from a number of websites, including openstreetmap.org. <ulink url="http://nzjrs.github.com/osm-gps-map/">http://nzjrs.github.com/osm-gps-map/</ulink>.
     </para>
   </section>
   <section>
@@ -246,9 +228,7 @@
     
     <para>
 
-      <package>qwtpolar-devel</package> is a library for plotting polar graphs. <ulink url="http://qwtpolar.sourceforge.net/">
-      <ulink url="http://qwtpolar.sourceforge.net/">http://qwtpolar.sourceforge.net/</ulink>
-      </ulink>.
+      <package>qwtpolar-devel</package> is a library for plotting polar graphs. <ulink url="http://qwtpolar.sourceforge.net/">http://qwtpolar.sourceforge.net/</ulink>.
     </para>
   </section>
   <section>
@@ -257,9 +237,7 @@
     
     <para>
 
-      <package>shunit2</package> is a unit test framework for shell scripts similar to PyUnit or JUnit.  <ulink url="http://code.google.com/p/shunit2/">
-      <ulink url="http://code.google.com/p/shunit2/">http://code.google.com/p/shunit2/</ulink>
-      </ulink>.
+      <package>shunit2</package> is a unit test framework for shell scripts similar to PyUnit or JUnit.  <ulink url="http://code.google.com/p/shunit2/">http://code.google.com/p/shunit2/</ulink>.
     </para>
   </section>
   <section>
@@ -276,9 +254,7 @@
     
     <para>
 
-      <package>why-emacs</package> is an Emacs add on for the Why software verification tool.  <ulink url="http://why.lri.fr/">
-      <ulink url="http://why.lri.fr/">http://why.lri.fr/</ulink>
-      </ulink>.  Why supports a number of theorem provers including Ergo, haRVey and Zenon, as well as a number of others.
+      <package>why-emacs</package> is an Emacs add on for the Why software verification tool.  <ulink url="http://why.lri.fr/">http://why.lri.fr/</ulink>.  Why supports a number of theorem provers including Ergo, haRVey and Zenon, as well as a number of others.
     </para>
   </section>
   <section>
@@ -286,9 +262,7 @@
     <title>wso2</title>
     
     <para>
-      New to Fedora 16, the WSO2 Web Services Framework for C++ is an enterprise grade C++ library for providing and consuming Web Services in C++.  Fedora includes version 2.1.0 of the framework.  Documentation may be found at <ulink url="http://wso2.org/project/wsf/cpp/2.0.0/docs/">
-      <ulink url="http://wso2.org/project/wsf/cpp/2.0.0/docs/">http://wso2.org/project/wsf/cpp/2.0.0/docs/</ulink>
-      </ulink>. 
+      New to Fedora 16, the WSO2 Web Services Framework for C++ is an enterprise grade C++ library for providing and consuming Web Services in C++.  Fedora includes version 2.1.0 of the framework.  Documentation may be found at <ulink url="http://wso2.org/project/wsf/cpp/2.0.0/docs/">http://wso2.org/project/wsf/cpp/2.0.0/docs/</ulink>. 
     </para>
   </section>
 </section>
diff --git a/en-US/Multimedia.xml b/en-US/Multimedia.xml
index cccaed3..0265091 100644
--- a/en-US/Multimedia.xml
+++ b/en-US/Multimedia.xml
@@ -13,9 +13,7 @@
     
     <para>
 
-      <package>gnome-paint</package> is a simple, easy-to-use paint program for GNOME.  Fedora 16 includes version 0.4.0.  The project's web page may be found at <ulink url="https://launchpad.net/gnome-paint">
-      <ulink url="https://launchpad.net/gnome-paint">https://launchpad.net/gnome-paint</ulink>
-      </ulink>.
+      <package>gnome-paint</package> is a simple, easy-to-use paint program for GNOME.  Fedora 16 includes version 0.4.0.  The project's web page may be found at <ulink url="https://launchpad.net/gnome-paint">https://launchpad.net/gnome-paint</ulink>.
     </para>
   </section>
   <section>
diff --git a/en-US/Networking.xml b/en-US/Networking.xml
index b66edbf..b3a8262 100644
--- a/en-US/Networking.xml
+++ b/en-US/Networking.xml
@@ -12,9 +12,7 @@
     <title>ckermit</title>
     
     <para>
-      New to Fedora 16 is <package>ckermit</package>, an updated implementation of the venerable Kermit file transfer program.  The Kermit protocol is available on almost all architectures, so may well be the file transfer mechanism of choice when dealing with a less capable platform.  The project's websit is <ulink url="http://www.columbia.edu/kermit/ck90.html">
-      <ulink url="http://www.columbia.edu/kermit/ck90.html">http://www.columbia.edu/kermit/ck90.html</ulink>
-      </ulink>.
+      New to Fedora 16 is <package>ckermit</package>, an updated implementation of the venerable Kermit file transfer program.  The Kermit protocol is available on almost all architectures, so may well be the file transfer mechanism of choice when dealing with a less capable platform.  The project's website is <ulink url="http://www.columbia.edu/kermit/ck90.html">http://www.columbia.edu/kermit/ck90.html</ulink>.
     </para>
   </section>
   <section>
@@ -23,9 +21,7 @@
     
     <para>
 
-      <package>hotot</package> is a lightweight microblogging client.  It supports the native notification systems of both KDE and GNOME. The project's website is at <ulink url="http://hotot.org/">
-      <ulink url="http://hotot.org/">http://hotot.org/</ulink>
-      </ulink>.
+      <package>hotot</package> is a lightweight microblogging client.  It supports the native notification systems of both KDE and GNOME. The project's website is at <ulink url="http://hotot.org/">http://hotot.org/</ulink>.
     </para>
   </section>
   <section>
@@ -34,9 +30,7 @@
     
     <para>
 
-      <package>ike</package> is a free IPSEC VPN client can be used to communicate with Open Source IPSEC VPN servers as well as some commercial IPSEC VPN servers.  Version 2.1.7 is included in Fedora 16.  <ulink url="http://www.shrew.net/">
-      <ulink url="http://www.shrew.net/">http://www.shrew.net/</ulink>
-      </ulink>.
+      <package>ike</package> is a free IPSEC VPN client can be used to communicate with Open Source IPSEC VPN servers as well as some commercial IPSEC VPN servers.  Version 2.1.7 is included in Fedora 16.  <ulink url="http://www.shrew.net/">http://www.shrew.net/</ulink>.
     </para>
   </section>
   <section>
@@ -45,9 +39,7 @@
     
     <para>
 
-      <package>qodem</package> is an open-source re-implementation of the DOS-era Qmodem serial communications package, updated for modern systems. <ulink url="http://qodem.sourceforge.net/">
-      <ulink url="http://qodem.sourceforge.net/">http://qodem.sourceforge.net/</ulink>
-      </ulink>.
+      <package>qodem</package> is an open-source re-implementation of the DOS-era Qmodem serial communications package, updated for modern systems.  <ulink url="http://qodem.sourceforge.net/">http://qodem.sourceforge.net/</ulink>.
     </para>
   </section>
 </section>
diff --git a/en-US/Productivity.xml b/en-US/Productivity.xml
index a0babf5..52baf02 100644
--- a/en-US/Productivity.xml
+++ b/en-US/Productivity.xml
@@ -16,9 +16,7 @@
     
     <para>
 
-      <package>autojump</package> is a command line tool for moving around between different parts of the filesystem more easily than cd.  Fedora 16 now includes version 15 of <emphasis>autojump</emphasis>.  The project's wiki may be found at <ulink url="https://github.com/joelthelion/autojump/wiki">
-      <ulink url="https://github.com/joelthelion/autojump/wiki">https://github.com/joelthelion/autojump/wiki</ulink>
-      </ulink>.
+      <package>autojump</package> is a command line tool for moving around between different parts of the filesystem more easily than cd.  Fedora 16 now includes version 15 of <emphasis>autojump</emphasis>.  The project's wiki may be found at <ulink url="https://github.com/joelthelion/autojump/wiki">https://github.com/joelthelion/autojump/wiki</ulink>.
     </para>
   </section>
   <section>
@@ -120,9 +118,7 @@
     
     <para>
 
-      <package>cuneiform</package> is an open source OCR system and is new to Fedora 16.  Complete details may be found at <ulink url="https://launchpad.net/cuneiform-linux">
-      <ulink url="https://launchpad.net/cuneiform-linux">https://launchpad.net/cuneiform-linux</ulink>
-      </ulink>.
+      <package>cuneiform</package> is an open source OCR system and is new to Fedora 16.  Complete details may be found at <ulink url="https://launchpad.net/cuneiform-linux">https://launchpad.net/cuneiform-linux</ulink>.
     </para>
   </section>
   <section>
@@ -130,9 +126,7 @@
     <title>ease</title>
     
     <para>
-      Also new to Fedora 16 is <package>ease</package>.  <emphasis>ease</emphasis> is a simple, GNOME-based presentation system  For more information refer to <ulink url="http://www.ease-project.org/">
-      <ulink url="http://www.ease-project.org/">http://www.ease-project.org/</ulink>
-      </ulink>.
+      Also new to Fedora 16 is <package>ease</package>.  <emphasis>ease</emphasis> is a simple, GNOME-based presentation system  For more information refer to <ulink url="http://www.ease-project.org/">http://www.ease-project.org/</ulink>.
     </para>
   </section>
   <section>
@@ -141,9 +135,7 @@
     
     <para>
 
-      <package>oo2gd</package> is an add on to LibreOffice that allows export of office documents to Google Docs.  The project's website maybe found at <ulink url="http://code.google.com/p/ooo2gd/">
-      <ulink url="http://code.google.com/p/ooo2gd/">http://code.google.com/p/ooo2gd/</ulink>
-      </ulink>.
+      <package>oo2gd</package> is an add on to LibreOffice that allows export of office documents to Google Docs.  The project's website maybe found at <ulink url="http://code.google.com/p/ooo2gd/">http://code.google.com/p/ooo2gd/</ulink>.
     </para>
   </section>
   <section>
@@ -152,9 +144,7 @@
     
     <para>
 
-      <package>pal</package> is a command line calendar program, similar to <emphasis>gcal</emphasis> but with a number of additional features.  Additional details are at <ulink url="http://palcal.sourceforge.net/">
-      <ulink url="http://palcal.sourceforge.net/">http://palcal.sourceforge.net/</ulink>
-      </ulink>.
+      <package>pal</package> is a command line calendar program, similar to <emphasis>gcal</emphasis> but with a number of additional features.  Additional details are at <ulink url="http://palcal.sourceforge.net/">http://palcal.sourceforge.net/</ulink>.
     </para>
   </section>
   <section>
@@ -162,9 +152,7 @@
     <title>routino</title>
     
     <para>
-      Another new to Fedora 16 package is <package>routino</package>.  <emphasis>routino</emphasis> provides routing on OpenStreetMap data.  Additional information, including an online demonstration, may be found at <ulink url="http://www.routino.org/">
-      <ulink url="http://www.routino.org/">http://www.routino.org/</ulink>
-      </ulink>.
+      Another new to Fedora 16 package is <package>routino</package>.  <emphasis>routino</emphasis> provides routing on OpenStreetMap data.  Additional information, including an online demonstration, may be found at <ulink url="http://www.routino.org/">http://www.routino.org/</ulink>.
     </para>
   </section>
   <section>
@@ -173,9 +161,7 @@
     
     <para>
 
-      <package>'writetype</package> is a program that helps younger students experience success in writing.  It is designed especially for schools to transform technology from a barrier into an opportunity for success. <ulink url="http://writetype.bernsteinforpresident.com/">
-      <ulink url="http://writetype.bernsteinforpresident.com/">http://writetype.bernsteinforpresident.com/</ulink>
-      </ulink>.
+      <package>'writetype</package> is a program that helps younger students experience success in writing.  It is designed especially for schools to transform technology from a barrier into an opportunity for success.  <ulink url="http://writetype.bernsteinforpresident.com/">http://writetype.bernsteinforpresident.com/</ulink>.
     </para>
   </section>
 </section>
diff --git a/en-US/Scientific_and_Technical.xml b/en-US/Scientific_and_Technical.xml
index 665eb38..8e7047e 100644
--- a/en-US/Scientific_and_Technical.xml
+++ b/en-US/Scientific_and_Technical.xml
@@ -19,9 +19,7 @@
     
     <para>
 
-      <package>ATpy</package> is a Python library for manipulating astronomical tables.  Details are available at <ulink url="http://atpy.github.com/">
-      <ulink url="http://atpy.github.com/">http://atpy.github.com/</ulink>
-      </ulink>.
+      <package>ATpy</package> is a Python library for manipulating astronomical tables.  Details are available at <ulink url="http://atpy.github.com/">http://atpy.github.com/</ulink>.
     </para>
   </section>
   <section>
@@ -30,9 +28,7 @@
     
     <para>
 
-      <package>bowtie</package> is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).  <ulink url="http://bowtie-bio.sourceforge.net/index.shtml">
-      <ulink url="http://bowtie-bio.sourceforge.net/index.shtml">http://bowtie-bio.sourceforge.net/index.shtml</ulink>
-      </ulink>.
+      <package>bowtie</package> is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).  <ulink url="http://bowtie-bio.sourceforge.net/index.shtml">http://bowtie-bio.sourceforge.net/index.shtml</ulink>.
     </para>
   </section>
   <section>
@@ -40,9 +36,7 @@
     <title>DSDP</title>
     
     <para>
-      The DSDP software is a free open source implementation of an interior-point method for semidefinite programming. It provides primal and dual solutions, exploits low-rank structure and sparsity in the data, and has relatively low memory requirements for an interior-point method. It allows feasible and infeasible starting points and provides approximate certificates of infeasibility when no feasible solution exists. The dual-scaling algorithm implemented in this package has a convergence proof and worst-case polynomial complexity under mild assumptions on the data.  For full documentation refer to <ulink url="http://www.mcs.anl.gov/hs/software/DSDP/">
-      <ulink url="http://www.mcs.anl.gov/hs/software/DSDP/">http://www.mcs.anl.gov/hs/software/DSDP/</ulink>
-      </ulink>. 
+      The DSDP software is a free open source implementation of an interior-point method for semidefinite programming. It provides primal and dual solutions, exploits low-rank structure and sparsity in the data, and has relatively low memory requirements for an interior-point method. It allows feasible and infeasible starting points and provides approximate certificates of infeasibility when no feasible solution exists. The dual-scaling algorithm implemented in this package has a convergence proof and worst-case polynomial complexity under mild assumptions on the data.  For full documentation refer to <ulink url="http://www.mcs.anl.gov/hs/software/DSDP/">http://www.mcs.anl.gov/hs/software/DSDP/</ulink>. 
     </para>
   </section>
   <section>
@@ -51,9 +45,7 @@
     
     <para>
 
-      <package>fastx_toolkit</package> is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.  <ulink url="http://hannonlab.cshl.edu/fastx_toolkit/index.html">
-      <ulink url="http://hannonlab.cshl.edu/fastx_toolkit/index.html">http://hannonlab.cshl.edu/fastx_toolkit/index.html</ulink>
-      </ulink>.
+      <package>fastx_toolkit</package> is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.  <ulink url="http://hannonlab.cshl.edu/fastx_toolkit/index.html">http://hannonlab.cshl.edu/fastx_toolkit/index.html</ulink>.
     </para>
   </section>
   <section>
@@ -61,9 +53,7 @@
     <title>IBSimu</title>
     
     <para>
-      Ion Beam Simulator or <package>IBSimu</package> is an ion optical computer simulation package for ion optics, plasma extraction and space charge dominated ion beam transport using Vlasov iteration.  More information at <ulink url="http://ibsimu.sourceforge.net/">
-      <ulink url="http://ibsimu.sourceforge.net/">http://ibsimu.sourceforge.net/</ulink>
-      </ulink>.
+      Ion Beam Simulator or <package>IBSimu</package> is an ion optical computer simulation package for ion optics, plasma extraction and space charge dominated ion beam transport using Vlasov iteration.  More information at <ulink url="http://ibsimu.sourceforge.net/">http://ibsimu.sourceforge.net/</ulink>.
     </para>
   </section>
   <section>
@@ -72,9 +62,7 @@
     
     <para>
 
-      <package>gappa</package> is a tool intended to help verifying and formally proving properties on numerical programs dealing with floating-point or fixed-point arithmetic.  Fedora 16 upgrades to version 0.15.0.  The project's web site may be found at <ulink url="http://gappa.gforge.inria.fr/">
-      <ulink url="http://gappa.gforge.inria.fr/">http://gappa.gforge.inria.fr/</ulink>
-      </ulink>.
+      <package>gappa</package> is a tool intended to help verifying and formally proving properties on numerical programs dealing with floating-point or fixed-point arithmetic.  Fedora 16 upgrades to version 0.15.0.  The project's web site may be found at <ulink url="http://gappa.gforge.inria.fr/">http://gappa.gforge.inria.fr/</ulink>.
     </para>
   </section>
 </section>


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