Fedora 12 Update: bfast-0.6.4d-5.fc12

updates at fedoraproject.org updates at fedoraproject.org
Tue Jul 13 07:35:09 UTC 2010


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Fedora Update Notification
FEDORA-2010-10462
2010-06-28 16:28:29
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Name        : bfast
Product     : Fedora 12
Version     : 0.6.4d
Release     : 5.fc12
URL         : http://bfast.sourceforge.net
Summary     : Blat-like Fast Accurate Search Tool
Description :

BFAST facilitates the fast and accurate mapping of short reads to
reference sequences.  Some advantages of BFAST include:

Speed: enables billions of short reads to be mapped quickly.

Accuracy: A priori probabilities for mapping reads with defined set of variants.

An easy way to measurably tune accuracy at the expense of speed.

Specifically, BFAST was designed to facilitate whole-genome
resequencing, where mapping billions of short reads with variants is
of utmost importance.

BFAST supports both Illumina and ABI SOLiD data, as well as any other
Next-Generation Sequencing Technology (454, Helicos), with particular
emphasis on sensitivity towards errors, SNPs and especially
indels. Other algorithms take short-cuts by ignoring errors, certain
types of variants (indels), and even require further alignment, all to
be the "fastest" (but still not complete). BFAST is able to be tuned
to find variants regardless of the error-rate, polymorphism rate, or
other factors.

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Update Information:

Initial release
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References:

  [ 1 ] Bug #606288 - Review Request: bfast -  Blat-like Fast Accurate Search Tool
        https://bugzilla.redhat.com/show_bug.cgi?id=606288
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This update can be installed with the "yum" update program.  Use 
su -c 'yum update bfast' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.

All packages are signed with the Fedora Project GPG key.  More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
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