Fedora 16 Update: R-GenomicFeatures-1.6.1-1.fc16

updates at fedoraproject.org updates at fedoraproject.org
Tue Nov 29 00:17:50 UTC 2011

Fedora Update Notification
2011-11-15 23:36:23

Name        : R-GenomicFeatures
Product     : Fedora 16
Version     : 1.6.1
Release     : 1.fc16
URL         : http://bioconductor.org/packages/2.9/bioc/html/GenomicFeatures.html
Summary     : Tools for making and manipulating transcript centric annotations
Description :
A set of tools and methods for making and manipulating transcript centric
annotations. With these tools the user can easily download the genomic
locations of the transcripts, exons and cds of a given organism, from either
the UCSC Genome Browser or a BioMart database (more sources will be supported
in the future). This information is then stored in a local database that
keeps track of the relationship between transcripts, exons, cds and genes.
Flexible methods are provided for extracting the desired features in a
convenient format.

Update Information:

Update R to 2.14.0. This required a mass rebuild of R components.

* Wed Nov  9 2011 Tom Callaway <spot at fedoraproject.org> - 1.6.1-1
- update to 1.6.1

  [ 1 ] Bug #751003 - New version of R 2.14.0 is available
  [ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
  [ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
  [ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
  [ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression

This update can be installed with the "yum" update program.  Use 
su -c 'yum update R-GenomicFeatures' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.

All packages are signed with the Fedora Project GPG key.  More details on the
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