Fedora 15 Update: BEDTools-2.15.0-1.fc15

[updates at fedoraproject.org]

--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2012-0115
2012-01-05 20:37:57
--------------------------------------------------------------------------------

Name        : BEDTools
Product     : Fedora 15
Version     : 2.15.0
Release     : 1.fc15
URL         : http://code.google.com/p/bedtools/
Summary     : A flexible suite of utilities for comparing genomic features
Description :

The BEDTools utilities allow one to address common genomics tasks such
as finding feature overlaps and computing coverage. The utilities are
largely based on four widely-used file formats: BED, GFF/GTF, VCF, and
SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that
answer complicated research questions by "streaming" several BEDTools
together.

--------------------------------------------------------------------------------
Update Information:

Update to upstream release 2.15.0 with new command-line interface
--------------------------------------------------------------------------------
ChangeLog:

* Wed Jan  4 2012 Adam Huffman <verdurin at fedoraproject.org> - 2.15.0-1
- update to new upstream release 2.15.0
- new unified command line interface 'bedtools'
- add python BR for new Makefile target to generate legacy commands
- remove 'overlap'
- add 'bedpeToBam', 'clusterBed', 'getOverlap', 'groupBy'
- add 'multiIntersectBed', 'windowMaker'
* Fri Oct 28 2011 Adam Huffman <bloch at verdurin.com> - 2.13.4-1
- new upstream minor bugfix release, see http://code.google.com/p/bedtools/
* Thu Sep  8 2011 Adam Huffman <bloch at verdurin.com> - 2.13.1-1
- new upstream minor release including fixes for tagBam
* Tue Sep  6 2011 Adam Huffman <bloch at verdurin.com> - 2.13.0-1
- new upstream release 2.13.0
- new tools tagBam and nucBed
* Tue Apr 12 2011 Adam Huffman <bloch at verdurin.com> - 2.12.0-1
- new upstream release 2.12.0
- new tools cuffToTrans and flankBed
* Thu Feb 17 2011 Adam Huffman <bloch at verdurin.com> - 2.11.2-1
- new upstream release
- now README.rst
- remove groupBy command, now in filo
- new fjoin command
--------------------------------------------------------------------------------

This update can be installed with the "yum" update program.  Use 
su -c 'yum update BEDTools' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.

All packages are signed with the Fedora Project GPG key.  More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------