Fedora 18 Update: R-biomaRt-2.16.0-1.fc18

updates at fedoraproject.org updates at fedoraproject.org
Thu May 2 04:00:23 UTC 2013


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Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
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Name        : R-biomaRt
Product     : Fedora 18
Version     : 2.16.0
Release     : 1.fc18
URL         : http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html
Summary     : R Interface to BioMart databases
Description :
In recent years a wealth of biological data has become available in public
data repositories. Easy access to these valuable data resources and firm
integration with data analysis is needed for comprehensive bioinformatics data
analysis. biomaRt provides an interface to a growing collection of databases
implementing the BioMart software suite (http://www.biomart.org). The package
enables retrieval of large amounts of data in a uniform way without the need
to know the underlying database schemas or write complex SQL queries. Examples
of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and
dbSNP mapped to Ensembl. These major databases give biomaRt users direct
access to a diverse set of data and enable a wide range of powerful online
queries from gene annotation to database mining.

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Update Information:

Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
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ChangeLog:

* Thu Apr 11 2013 Tom Callaway <spot at fedoraproject.org> - 2.16.0-1
- update to 2.16.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng at lists.fedoraproject.org> - 2.10.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
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References:

  [ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
        https://bugzilla.redhat.com/show_bug.cgi?id=948083
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This update can be installed with the "yum" update program.  Use 
su -c 'yum update R-biomaRt' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.

All packages are signed with the Fedora Project GPG key.  More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
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