Fedora 22 Update: openms-2.0.0-12.fc22

[updates at fedoraproject.org]

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Fedora Update Notification
FEDORA-2015-8413
2015-05-17 18:36:12
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Name        : openms
Product     : Fedora 22
Version     : 2.0.0
Release     : 12.fc22
URL         : http://open-ms.sourceforge.net/
Summary     : LC/MS data management and analyses
Description :
OpenMS is an open-source C++ library for LC/MS data management and analyses.
It offers an infrastructure for the rapid development
of mass spectrometry related software.
It comes with a vast variety ready-to-use tools for proteomics and
metabolomics data analysis (TOPPTools) and powerful 2D and
3D visualization(TOPPView).
OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH.
OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data.

The OpenMS Proteomics Pipeline is a pipeline for
the analysis of HPLC-MS data.
It consists of several small applications that
can be chained to create analysis pipelines tailored
for a specific problem.

The TOPP tools are divided into several subgroups:
 - Graphical Tools
 - File Handling
 - Signal Processing and Preprocessing
 - Quantitation
 - Map Alignment
 - Protein/Peptide Identification
 - Protein/Peptide Processing
 - Targeted Experiments
 - Peptide Property Prediction
 - Misc

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Update Information:

- **Update to 2.0.0**
- **Bug fix in upstream desktop files**
- **Fix PeakPickerWavelet test**
- **Set environment variables in desktop files**
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ChangeLog:

* Fri May 15 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-12
- Bug fix in upstream desktop files
* Fri May 15 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-11
- Fix PeakPickerWavelet test
- Set environment variables in desktop files
* Fri May  8 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-10
- Excluded TOPP_XTandemAdapter_ test
* Fri May  8 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-9
- Rebuild after XTandem update
- Try to execute XTandem test
* Sat May  2 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-8
- memleaks test excluded
* Sat May  2 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-7
- mzML unittests patched
- PyOpenMS compiled without parallel make
- PyOpenMS tests disabled
* Fri May  1 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-6
- Source archive re-compressed by upstream
- Sym-linked the library pyopenms/libSuperHirn.so
* Fri May  1 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-5
- SPEC cleanups
* Thu Apr 30 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-4
- Patched pyOpenMS version definition
- Removed 'pyopenms_bdist_egg' make target
* Thu Apr 30 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-3
- PyOpenMS is still compiled against Python2 on Linux
* Mon Apr 13 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-2
- Fix make test
* Sat Apr 11 2015 Antonio Trande <sagitter at fedoraproject.org> 2.0.0-1
- Update to the release 2.0
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This update can be installed with the "yum" update program.  Use
su -c 'yum update openms' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.

All packages are signed with the Fedora Project GPG key.  More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
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