Fedora 23 Update: mmseq-1.0.8a-12.fc23

updates at fedoraproject.org updates at fedoraproject.org
Sat Mar 5 22:27:10 UTC 2016

Fedora Update Notification
2016-03-05 18:27:22.059562

Name        : mmseq
Product     : Fedora 23
Version     : 1.0.8a
Release     : 12.fc23
URL         : https://github.com/eturro/mmseq
Summary     : Haplotype and isoform specific expression estimation for RNA-seq
Description :
Software for fast, scalable haplotype and isoform expression
estimation using multi-mapping RNA-seq reads.  Example scripts are included.

Update Information:

Update armadillo to the supported stable release.  Changes since version (5.600)
* correction for datum::Z_0 constant * fixes for corner cases in gmm_diag class
* fixes for spsolve(), eigs_sym(), eigs_gen(), svds() * advanced constructors
for using auxiliary memory now have the default of strict = false * Cube class
now delays allocation of .slice() related structures until needed * stricter
handling of matrix objects by hist() and histc() * added conv2() for 2D
convolution * added stand-alone kmeans() function for clustering data * added
trunc() * added ind2sub() and sub2ind() * added .for_each() to Mat, Row, Col,
Cube and field classes * added rcond() for estimating the reciprocal condition
number * added Schur decomposition: schur() * expanded solve() to find
approximate solutions for rank-deficient systems * expanded join_slices() to
handle joining cubes with matrices* faster handling of non-contiguous submatrix
views in compound expressions * expanded each_col(), each_row() and each_slice()
to handle C++11 lambda functions * expanded diagmat() to handle non-square
matrices and arbitrary diagonals * expanded trace() to handle non-square
matrices * extended conv() to optionally provide central convolution * faster
handling of multiply-and-accumulate by accu() when using Intel MKL, ATLAS or
OpenBLAS * faster norm() and normalise() when using Intel MKL, ATLAS or OpenBLAS

  [ 1 ] Bug #1268277 - armadillo-6.500.5 is available

This update can be installed with the "yum" update program. Use
su -c 'yum update mmseq' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.

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