[Bug 444735] New: Review Request: io_lib - General purpose trace file library

bugzilla at redhat.com bugzilla at redhat.com
Wed Apr 30 12:28:37 UTC 2008


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https://bugzilla.redhat.com/show_bug.cgi?id=444735

           Summary: Review Request: io_lib - General purpose trace file
                    library
           Product: Fedora
           Version: rawhide
          Platform: All
        OS/Version: Linux
            Status: NEW
          Severity: medium
          Priority: medium
         Component: Package Review
        AssignedTo: nobody at fedoraproject.org
        ReportedBy: christian.iseli at licr.org
         QAContact: extras-qa at fedoraproject.org
                CC: fedora-package-review at redhat.com,notting at redhat.com


Here is a bioinformatics package, quite useful to read and
work with the various file formats produced by sequencing machines.

I have verified that the license tag is ok:
https://www.redhat.com/archives/fedora-devel-list/2008-April/msg02302.html

The name sounds a bit too general, but it is the upstream name...
Another possibility would be something like:
staden-io_lib or a variant thereof.

This package produces a bunch of binaries useful for
handling various file formats found in bioinformatics,
plus a static lib that can potentially be used by other
tools.  There is no shared library, so I just packaged
the static lib as per the guidelines.  If someone feels
motivated to write a patch to produce a shared lib, I'll
gladly accept patches and try to send them upstream.

This builds in mock for F-8 and devel, and the apps seem
to run fine as far as I know.

Spec URL: http://c4chris.fedorapeople.org/io_lib.spec
SRPM URL: http://c4chris.fedorapeople.org/io_lib-1.11.0-0.fc8.src.rpm
Description:
Io_lib is a library of file reading and writing code to provide a general
purpose trace file (and Experiment File) reading interface. The programmer
simply calls the (eg) read_reading to create a "Read" C structure with the
data loaded into memory. It has been compiled and tested on a variety
of unix systems, MacOS X and MS Windows.

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