[Bug 627936] Review Request: bowtie - An ultrafast, memory-efficient short read aligner

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https://bugzilla.redhat.com/show_bug.cgi?id=627936

--- Comment #1 from Adam Huffman <bloch at verdurin.com> 2010-08-27 08:54:39 EDT ---
There are some problems that still need to be fixed, such as the fact that the
CFLAGS are hard-coded in the Makefile.  I've mentioned this to upstream and
asked that they amend the Makefile so as to allow command-line overriding of
the CFLAGS.  There's been no response yet.

Here's the rpmlint output:


bowtie.src: W: spelling-error Summary(en_US) ultrafast -> ultra fast,
ultra-fast, ultrafilter
bowtie.src: W: spelling-error %description -l en_US ultrafast -> ultra fast,
ultra-fast, ultrafilter
bowtie.src: W: spelling-error %description -l en_US Langmead -> Lang mead,
Lang-mead, Langmuir
bowtie.src: W: spelling-error %description -l en_US Ultrafast -> Ultra fast,
Ultra-fast, Ultrafilter
bowtie.x86_64: W: spelling-error Summary(en_US) ultrafast -> ultra fast,
ultra-fast, ultrafilter
bowtie.x86_64: W: spelling-error %description -l en_US ultrafast -> ultra fast,
ultra-fast, ultrafilter
bowtie.x86_64: W: spelling-error %description -l en_US Langmead -> Lang mead,
Lang-mead, Langmuir
bowtie.x86_64: W: spelling-error %description -l en_US Ultrafast -> Ultra fast,
Ultra-fast, Ultrafilter
bowtie.x86_64: W: no-manual-page-for-binary bowtie
bowtie.x86_64: W: no-manual-page-for-binary bowtie-inspect
bowtie.x86_64: W: no-manual-page-for-binary bowtie-build
bowtie.x86_64: W: spelling-error Summary(en_US) ultrafast -> ultra fast,
ultra-fast, ultrafilter
bowtie.x86_64: W: spelling-error %description -l en_US ultrafast -> ultra fast,
ultra-fast, ultrafilter
bowtie.x86_64: W: spelling-error %description -l en_US Langmead -> Lang mead,
Lang-mead, Langmuir
bowtie.x86_64: W: spelling-error %description -l en_US Ultrafast -> Ultra fast,
Ultra-fast, Ultrafilter
bowtie.x86_64: W: no-manual-page-for-binary bowtie
bowtie.x86_64: W: no-manual-page-for-binary bowtie-inspect
bowtie.x86_64: W: no-manual-page-for-binary bowtie-build
bowtie-debuginfo.x86_64: E: debuginfo-without-sources
bowtie-debuginfo.x86_64: E: debuginfo-without-sources

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