[Bug 689870] New: Review Request: tabix - Generic indexer for TAB-delimited genome position files

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Tue Mar 22 17:21:58 UTC 2011


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Summary: Review Request: tabix - Generic indexer for TAB-delimited genome position files

https://bugzilla.redhat.com/show_bug.cgi?id=689870

           Summary: Review Request: tabix - Generic indexer for
                    TAB-delimited genome position files
           Product: Fedora
           Version: rawhide
          Platform: All
        OS/Version: Linux
            Status: NEW
          Severity: medium
          Priority: medium
         Component: Package Review
        AssignedTo: nobody at fedoraproject.org
        ReportedBy: bloch at verdurin.com
         QAContact: extras-qa at fedoraproject.org
                CC: notting at redhat.com, fedora-package-review at redhat.com
   Estimated Hours: 0.0
    Classification: Fedora


Spec URL: http://verdurin.fedorapeople.org/reviews/tabix/tabix.spec
SRPM URL:
http://verdurin.fedorapeople.org/reviews/tabix/tabix-0.2.3-1.fc16.src.rpm
Description: 
Tabix indexes a TAB-delimited genome position file in.tab.bgz and
creates an index file in.tab.bgz.tbi when region is absent from the
command-line. The input data file must be position sorted and
compressed by bgzip which has a gzip(1) like interface. After
indexing, tabix is able to quickly retrieve data lines overlapping
regions specified in the format "chr:beginPos-endPos". Fast data
retrieval also works over network if URI is given as a file name and
in this case the index file will be downloaded if it is not present
locally.

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