[Bug 689870] New: Review Request: tabix - Generic indexer for TAB-delimited genome position files
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Tue Mar 22 17:21:58 UTC 2011
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Summary: Review Request: tabix - Generic indexer for TAB-delimited genome position files
https://bugzilla.redhat.com/show_bug.cgi?id=689870
Summary: Review Request: tabix - Generic indexer for
TAB-delimited genome position files
Product: Fedora
Version: rawhide
Platform: All
OS/Version: Linux
Status: NEW
Severity: medium
Priority: medium
Component: Package Review
AssignedTo: nobody at fedoraproject.org
ReportedBy: bloch at verdurin.com
QAContact: extras-qa at fedoraproject.org
CC: notting at redhat.com, fedora-package-review at redhat.com
Estimated Hours: 0.0
Classification: Fedora
Spec URL: http://verdurin.fedorapeople.org/reviews/tabix/tabix.spec
SRPM URL:
http://verdurin.fedorapeople.org/reviews/tabix/tabix-0.2.3-1.fc16.src.rpm
Description:
Tabix indexes a TAB-delimited genome position file in.tab.bgz and
creates an index file in.tab.bgz.tbi when region is absent from the
command-line. The input data file must be position sorted and
compressed by bgzip which has a gzip(1) like interface. After
indexing, tabix is able to quickly retrieve data lines overlapping
regions specified in the format "chr:beginPos-endPos". Fast data
retrieval also works over network if URI is given as a file name and
in this case the index file will be downloaded if it is not present
locally.
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