rpms/wise2/devel wise2-build.patch, NONE, 1.1 wise2.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
Alex Lancaster (alexlan)
fedora-extras-commits at redhat.com
Tue Apr 24 05:16:19 UTC 2007
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Author: alexlan
Update of /cvs/extras/rpms/wise2/devel
In directory cvs-int.fedora.redhat.com:/tmp/cvs-serv8012/devel
Modified Files:
.cvsignore sources
Added Files:
wise2-build.patch wise2.spec
Log Message:
Initial import.
wise2-build.patch:
--- NEW FILE wise2-build.patch ---
--- src/makefile.orig 2007-04-11 07:52:41.000000000 -0700
+++ src/makefile 2007-04-11 07:53:04.000000000 -0700
@@ -89,7 +89,6 @@
bin :
mkdir bin
mv models/pswdb models/psw models/genewisedb models/estwisedb models/estwise models/genewise models/dba models/dnal models/genomewise ./bin
- csh welcome.csh
libs :
(cd base ; make CC="$(CC)" CFLAGS="$(CFLAGS)" libwisebase.a )
--- NEW FILE wise2.spec ---
Name: wise2
Version: 2.2.0
Release: 2%{?dist}
Summary: Tools for comparison of biopolymers
Group: Applications/Engineering
License: GPL
URL: http://www.ebi.ac.uk/Wise2/
Source0: ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/wise%{version}.tar.gz
Patch0: wise2-build.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
%description
Wise2 is a package focused on comparisons of biopolymers, commonly DNA
sequence and protein sequence. A strength of Wise2 is the
comparison of DNA sequence at the level of its protein
translation. This comparison allows the simultaneous prediction of
gene structure with homology based alignment.
%prep
%setup -q -n wise%{version}
## don't run "welcome.csh"
%patch0 -p0
## fix interpreter in examples
sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' docs/gettex.pl
## fix perms
chmod -x test_data/rrm.HMM
## pull out licenses
for i in base dynlibsrc dyc
do
cp src/$i/LICENSE LICENSE.$i
done
cp src/models/GNULICENSE LICENSE.GPL
%build
cd src
## removed "{?_smp_mflags}", does not support parallel build
make CC=gcc CFLAGS="-c $RPM_OPT_FLAGS" all
%install
rm -rf $RPM_BUILD_ROOT
cd src/bin
%{__mkdir_p} $RPM_BUILD_ROOT%{_bindir}
for i in dba dnal estwise estwisedb genewise genewisedb genomewise psw pswdb
do
%{__install} $i $RPM_BUILD_ROOT/%{_bindir}
done
cd -
# install architecture-independent data and config files
%{__mkdir_p} $RPM_BUILD_ROOT%{_datadir}/wise2
cd wisecfg
%{__install} -pm 644 * $RPM_BUILD_ROOT%{_datadir}/wise2
# install scripts to automatically set the WISECONFIGDIR environment variable
%{__mkdir_p} $RPM_BUILD_ROOT%{_sysconfdir}/profile.d
echo "export WISECONFIGDIR=%{_datadir}/wise2/" > $RPM_BUILD_ROOT%{_sysconfdir}/profile.d/wise2.sh
echo "setenv WISECONFIGDIR %{_datadir}/wise2/" > $RPM_BUILD_ROOT%{_sysconfdir}/profile.d/wise2.csh
%clean
rm -rf $RPM_BUILD_ROOT
%files
%defattr(-,root,root,-)
%doc docs test_data
%doc INSTALL LICENSE README LICENSE.base LICENSE.dynlibsrc LICENSE.dyc LICENSE.GPL
%{_bindir}/*
%{_datadir}/wise2
%config(noreplace) %{_sysconfdir}/profile.d/*
%changelog
* Mon Apr 12 2007 Alex Lancaster <alexl at users.sourceforge.net> 2.2.0-2
- Pass $RPM_OPT_FLAGS to compiler as per suggestion from Ralf Corsepius.
* Mon Apr 11 2007 Alex Lancaster <alexl at users.sourceforge.net> 2.2.0-1
- Initial Fedora package.
Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/wise2/devel/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- .cvsignore 23 Apr 2007 16:50:32 -0000 1.1
+++ .cvsignore 24 Apr 2007 05:15:44 -0000 1.2
@@ -0,0 +1 @@
+wise2.2.0.tar.gz
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/wise2/devel/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- sources 23 Apr 2007 16:50:32 -0000 1.1
+++ sources 24 Apr 2007 05:15:44 -0000 1.2
@@ -0,0 +1 @@
+0584240f77885e37528e99e64535ab60 wise2.2.0.tar.gz
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