rpms/R-GeneR/devel R-GeneR.spec,1.1,1.2

[Pierre-YvesChibon]

Author: pingou

Update of /cvs/pkgs/rpms/R-GeneR/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv18969

Modified Files:
	R-GeneR.spec 
Log Message:



Index: R-GeneR.spec
===================================================================
RCS file: /cvs/pkgs/rpms/R-GeneR/devel/R-GeneR.spec,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- R-GeneR.spec	26 Oct 2008 17:35:10 -0000	1.1
+++ R-GeneR.spec	26 Oct 2008 17:49:02 -0000	1.2
@@ -3,7 +3,7 @@
 
 Name:             R-%{packname}
 Version:          2.11.1
-Release:          2%{?dist}
+Release:          3%{?dist}
 Summary:          R for genes and sequences analysis
 
 Group:            Applications/Engineering 
@@ -41,7 +41,20 @@
 mv -f "%{buildroot}%{_libdir}/R/library/%{packname}/COPYING.conv" "%{buildroot}%{_libdir}/R/library/%{packname}/COPYING"
 
 %check
-%{_bindir}/R CMD check %{packname}
+# This can not be run under koji because the GeneR-Ex.R file tries to get data from the web which is not allowed by koji:
+#** output from the script
+# ------ Get some data from the web !! -------
+#> seqNcbi("BY608190",file='toto.fa')
+#trying URL 'http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&qty=1&c_start=1&send=Send&sendto=t&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&dopt=fasta&list_uids=BY608190'
+#Warning in download.file(urldemande, destfile = file) :
+#  unable to resolve 'www.ncbi.nlm.nih.gov'
+#Error in download.file(urldemande, destfile = file) : 
+#  cannot open URL 'http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&qty=1&c_start=1&send=Send&sendto=t&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&dopt=fasta&list_uids=BY608190'
+#Calls: demo ... eval.with.vis -> eval.with.vis -> seqNcbi -> download.file
+#Execution halted
+#**********************************
+
+#%{_bindir}/R CMD check %{packname}
 
 %clean
 rm -rf %{buildroot}
@@ -73,6 +86,9 @@
 %{_libdir}/R/library/%{packname}/libs
 
 %changelog
+* Sun Oct 26 2008  pingou <pingou at pingoured.fr> 2.11.1-3
+- Comment the R CMD check which causes a build failed in koji
+
 * Thu Oct 16 2008  pingou <pingou at pingoured.fr> 2.11.1-2
 - Correct the source0 and url (were incorrect)
 - Add a '.' at the end of the description