rpms/perl-bioperl/devel .cvsignore, 1.5, 1.6 perl-bioperl.spec, 1.17, 1.18 sources, 1.6, 1.7

[Alex Lancaster]

Author: alexlan

Update of /cvs/extras/rpms/perl-bioperl/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv20818

Modified Files:
	.cvsignore perl-bioperl.spec sources 
Log Message:
* Sun Jan 18 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.9-0.4.3
- Update to 1.6.0 release candidate 3



Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/.cvsignore,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- .cvsignore	8 Jan 2009 06:48:43 -0000	1.5
+++ .cvsignore	18 Jan 2009 08:52:02 -0000	1.6
@@ -1 +1 @@
-BioPerl-1.5.9_2.tar.bz2
+BioPerl-1.5.9_3.tar.bz2


Index: perl-bioperl.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/perl-bioperl.spec,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -r1.17 -r1.18
--- perl-bioperl.spec	8 Jan 2009 06:48:43 -0000	1.17
+++ perl-bioperl.spec	18 Jan 2009 08:52:03 -0000	1.18
@@ -1,12 +1,12 @@
 Name:           perl-bioperl
 Version:        1.5.9
-Release:        0.3.2%{?dist}
+Release:        0.4.3%{?dist}
 Summary:        Perl tools for computational molecular biology
 
 Group:          Development/Libraries
 License:        GPL+ or Artistic
 URL:            http://www.bioperl.org/
-Source0:        http://bioperl.org/DIST/BioPerl-%{version}_2.tar.bz2
+Source0:        http://bioperl.org/DIST/BioPerl-%{version}_3.tar.bz2
 Patch0:         bioperl-1.5.9-paths.patch
 BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 
@@ -58,7 +58,7 @@
 many modules depend on each other to achieve a task.
 
 %prep
-%setup -q -n BioPerl-%{version}._2
+%setup -q -n BioPerl-%{version}._3
 %patch0 -p1 
 
 # temporarily remove PhyloNetwork before compiling until upstream says
@@ -70,13 +70,13 @@
 # these are the unwanted Requires for perl-bioperl-run, keeping in
 # case we need to do the temporary hack for bootstrapping again
 
-#cat << \EOF > %{_builddir}/BioPerl-%{version}._2/%{name}-req
+#cat << \EOF > %{_builddir}/BioPerl-%{version}._3/%{name}-req
 ##!/bin/sh
 #%{__perl_requires} $* |\
 #   sed -e '/perl(Bio::Tools::Run::Alignment::Clustalw)/d; /perl(Bio::Tools::Run::GenericParameters)/d; /perl(Bio::Tools::Run::Phylo::Molphy::ProtML)/d; /perl(Bio::Tools::Run::Phylo::Phylip::Neighbor)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtDist)/d; /perl(Bio::Tools::Run::Phylo::Phylip::ProtPars)/d; /perl(Bio::Tools::Run::RemoteBlast)/d'
 #EOF
  
-#%%define __perl_requires %{_builddir}/BioPerl-%{version}._2/%{name}-req
+#%%define __perl_requires %{_builddir}/BioPerl-%{version}._3/%{name}-req
 #chmod +x %{__perl_requires}
 
 # remove all execute bits from the doc stuff
@@ -129,6 +129,9 @@
 %{_mandir}/man3/*.3*    
 
 %changelog
+* Sun Jan 18 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.9-0.4.3
+- Update to 1.6.0 release candidate 3
+
 * Wed Jan  7 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.5.9-0.3.2
 - Update to 1.6.0 release candidate 2
 - Remove filter for Bio::Graphics*, upstream removed them from the


Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-bioperl/devel/sources,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- sources	8 Jan 2009 06:48:43 -0000	1.6
+++ sources	18 Jan 2009 08:52:03 -0000	1.7
@@ -1 +1 @@
-e01ce300592c8a5f7f1f1d2eba5405bc  BioPerl-1.5.9_2.tar.bz2
+d4cf25074d40c6797e7eeff8c925b5d6  BioPerl-1.5.9_3.tar.bz2