rpms/bwa/F-12 bwa.spec, NONE, 1.1 import.log, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2

[verdurin]

Author: verdurin

Update of /cvs/pkgs/rpms/bwa/F-12
In directory cvs01.phx2.fedoraproject.org:/tmp/cvs-serv18702/F-12

Modified Files:
	.cvsignore sources 
Added Files:
	bwa.spec import.log 
Log Message:
Initial import



--- NEW FILE bwa.spec ---
Name:           bwa
Version:        0.5.7
Release:        2%{?dist}
Summary:        Burrows-Wheeler Alignment tool

Group:          Applications/Engineering
License:        GPLv3
URL:            http://bio-bwa.sourceforge.net/
Source0:        http://downloads.sourceforge.net/bio-%{name}/%{name}-%{version}.tar.bz2
BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)

BuildRequires:  zlib-devel

%description

BWA is a program for aligning sequencing reads against a large
reference genome (e.g. human genome). It has two major components, one
for read shorter than 150bp and the other for longer reads.

%prep
%setup -q


%build
make %{?_smp_mflags} CFLAGS="%{optflags}"


%install
rm -rf %{buildroot}
mkdir -p %{buildroot}/%{_bindir}
mkdir -p %{buildroot}/%{_mandir}/man1

install -m 0755 bwa %{buildroot}/%{_bindir}
install -m 0755 solid2fastq.pl %{buildroot}/%{_bindir}
install -m 0755 qualfa2fq.pl %{buildroot}/%{_bindir}

install -m 0644 bwa.1 %{buildroot}/%{_mandir}/man1/bwa.1

%clean
rm -rf %{buildroot}


%files
%defattr(-,root,root,-)
%doc COPYING NEWS 
%{_mandir}/man1/%{name}.1*
%{_bindir}/bwa
%{_bindir}/qualfa2fq.pl
%{_bindir}/solid2fastq.pl


%changelog
* Sat May 29 2010 Adam Huffman <bloch at verdurin.com> - 0.5.7-2
- fix source URL
- install manpage
- fix cflags

* Fri May 28 2010 Adam Huffman <bloch at verdurin.com> - 0.5.7-1
- initial version



--- NEW FILE import.log ---
bwa-0_5_7-2_fc12:F-12:bwa-0.5.7-2.fc12.src.rpm:1275951921


Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/bwa/F-12/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- .cvsignore	7 Jun 2010 21:22:07 -0000	1.1
+++ .cvsignore	7 Jun 2010 23:06:19 -0000	1.2
@@ -0,0 +1 @@
+bwa-0.5.7.tar.bz2


Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/bwa/F-12/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -p -r1.1 -r1.2
--- sources	7 Jun 2010 21:22:07 -0000	1.1
+++ sources	7 Jun 2010 23:06:19 -0000	1.2
@@ -0,0 +1 @@
+ec1e467ad7a0bc106b5f610f17d9e95a  bwa-0.5.7.tar.bz2