[BEDTools] New upstream release with annotateBed tool and updated manual

[verdurin]

commit f675e1edf183352b2fbc5537a988349f740e7e97
Author: Adam Huffman <bloch at verdurin.com>
Date:   Wed Nov 17 13:34:42 2010 +0000

    New upstream release with annotateBed tool and updated manual

 .gitignore    |    2 ++
 BEDTools.spec |   15 ++++++++++-----
 sources       |    3 +--
 3 files changed, 13 insertions(+), 7 deletions(-)
---
diff --git a/.gitignore b/.gitignore
index 592acff..c483af7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,4 @@
 /BEDTools-User-Manual.v3.pdf
 /BEDTools.v2.9.0.tar.gz
+/BEDTools.v2.10.1.tar.gz
+/BEDTools-User-Manual.v4.pdf
diff --git a/BEDTools.spec b/BEDTools.spec
index 3d8f775..cb49fe5 100644
--- a/BEDTools.spec
+++ b/BEDTools.spec
@@ -1,6 +1,6 @@
 Name:		BEDTools
-Version:	2.9.0
-Release:	5%{?dist}
+Version:	2.10.1
+Release:	1%{?dist}
 Summary:	A flexible suite of utilities for comparing genomic features
 
 Group:		Applications/Engineering
@@ -9,10 +9,10 @@ URL:		http://code.google.com/p/bedtools/
 
 # Download is listed in an RPM-unfriendly way on the Google Code site
 # The file can be obtained at
-# http://code.google.com/p/bedtools/downloads/detail?name=BEDTools.v2.9.0.tar.gz
+# http://bedtools.googlecode.com/files/BEDTools.v2.10.1.tar.gz
 
 Source0:	http://bedtools.googlecode.com/files/%{name}.v%{version}.tar.gz
-Source1:	http://bedtools.googlecode.com/files/%{name}-User-Manual.v3.pdf
+Source1:	http://bedtools.googlecode.com/files/%{name}-User-Manual.v4.pdf
 BuildRoot:	%{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 
 BuildRequires:	  zlib-devel
@@ -72,6 +72,7 @@ rm -rf %{buildroot}
 %defattr(-,root,root,-)
 %doc README RELEASE_HISTORY LICENSE 
 %dir %{_datadir}/%{name}
+%{_bindir}/annotateBed
 %{_bindir}/bamToBed
 %{_bindir}/bed12ToBed6
 %{_bindir}/bedToBam
@@ -101,9 +102,13 @@ rm -rf %{buildroot}
 
 %files docs
 %defattr(-,root,root,-)
-%doc %{name}-User-Manual.v3.pdf
+%doc %{name}-User-Manual.v4.pdf
 
 %changelog
+* Wed Nov 17 2010 Adam Huffman <bloch at verdurin.com> - 2.10.1-1
+- new annotateBed tool
+- updated manual
+
 * Sun Sep 12 2010 Adam Huffman <bloch at verdurin.com> - 2.9.0-5
 - add license for -docs 
 
diff --git a/sources b/sources
index cf75a79..03f47e3 100644
--- a/sources
+++ b/sources
@@ -1,2 +1 @@
-85e66413587f3f1cbb5e9530c20c6d1e  BEDTools-User-Manual.v3.pdf
-a0ac1e63fe4a7ae72e33fd91c24ac3da  BEDTools.v2.9.0.tar.gz
+597fb82c8790fa47c18cd6bf8df25ac2  BEDTools-User-Manual.v4.pdf