[bwa] (23 commits) ...Merge branch 'master' into el5

[verdurin]

Summary of changes:

  9158348... Initialize branch F-13 for bwa (*)
  052667f... Initialize branch F-12 for bwa (*)
  7228568... Initial import (*)
  c1b94ba... Initial import (*)
  35b6bd5... Initial import (*)
  58c9b3d... Initialize branch EL-6 for bwa (*)
  055244b... New upstream release (*)
  3dc2848... New upstream release (*)
  38d944f... New upstream release (*)
  f11264d... dist-git conversion (*)
  a937112... dist-git conversion (*)
  c86691e... dist-git conversion (*)
  391dae9... Merge remote branch 'origin/f13/master' (*)
  995ecb7... Merge remote branch 'origin/f12/master' (*)
  9ef7747... Merge remote branch 'origin/el5/master' (*)
  1dd6636... Merge branch 'master' into f13 (*)
  6adc551... fix merge problem (*)
  3117936... Merge branch 'master' into el6 (*)
  98f0334... Merge branch 'master' into el6 (*)
  8246ec4... Fix conflict (*)
  d9a4fa8... Merge branch 'master' into f13 (*)
  3928c24... Merge branch 'master' into el6 (*)
  a99708d... Merge branch 'master' into el5 (*)

(*) This commit already existed in another branch; no separate mail sent