[BEDTools/f15] Update BEDTools to 2.13.1
verdurin
verdurin at fedoraproject.org
Thu Sep 8 13:09:16 UTC 2011
commit ef3a069ad026d31a1742dc9b860c5f545d608eaf
Author: Adam Huffman <bloch at verdurin.com>
Date: Thu Sep 8 12:11:56 2011 +0100
Update BEDTools to 2.13.1
BEDTools.spec | 18 ++++++++++++++----
1 files changed, 14 insertions(+), 4 deletions(-)
---
diff --git a/BEDTools.spec b/BEDTools.spec
index 39c452c..43fbb54 100644
--- a/BEDTools.spec
+++ b/BEDTools.spec
@@ -1,5 +1,5 @@
Name: BEDTools
-Version: 2.12.0
+Version: 2.13.1
Release: 1%{?dist}
Summary: A flexible suite of utilities for comparing genomic features
@@ -9,7 +9,7 @@ URL: http://code.google.com/p/bedtools/
# Download is listed in an RPM-unfriendly way on the Google Code site
# The file can be obtained at
-# http://bedtools.googlecode.com/files/BEDTools.v2.12.0.tar.gz
+# http://bedtools.googlecode.com/files/BEDTools.v2.13.0.tar.gz
Source0: http://bedtools.googlecode.com/files/%{name}.v%{version}.tar.gz
Source1: http://bedtools.googlecode.com/files/%{name}-User-Manual.v4.pdf
@@ -80,15 +80,17 @@ rm -rf %{buildroot}
%{_bindir}/closestBed
%{_bindir}/complementBed
%{_bindir}/coverageBed
-%{_bindir}/cuffToTrans
+#%{_bindir}/cuffToTrans
%{_bindir}/fastaFromBed
-%{_bindir}/fjoin
+#%{_bindir}/fjoin
%{_bindir}/flankBed
%{_bindir}/genomeCoverageBed
%{_bindir}/intersectBed
%{_bindir}/linksBed
%{_bindir}/maskFastaFromBed
%{_bindir}/mergeBed
+%{_bindir}/multiBamCov
+%{_bindir}/nucBed
%{_bindir}/overlap
%{_bindir}/pairToBed
%{_bindir}/pairToPair
@@ -96,6 +98,7 @@ rm -rf %{buildroot}
%{_bindir}/slopBed
%{_bindir}/sortBed
%{_bindir}/subtractBed
+%{_bindir}/tagBam
%{_bindir}/unionBedGraphs
%{_bindir}/windowBed
@@ -107,6 +110,13 @@ rm -rf %{buildroot}
%doc %{name}-User-Manual.v4.pdf
%changelog
+* Thu Sep 8 2011 Adam Huffman <bloch at verdurin.com> - 2.13.1-1
+- new upstream minor release including fixes for tagBam
+
+* Tue Sep 6 2011 Adam Huffman <bloch at verdurin.com> - 2.13.0-1
+- new upstream release 2.13.0
+- new tools tagBam and nucBed
+
* Tue Apr 12 2011 Adam Huffman <bloch at verdurin.com> - 2.12.0-1
- new upstream release 2.12.0
- new tools cuffToTrans and flankBed
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