[ugene/f17] Update to 1.11.3

[Yuliya Algaer]

commit f1285b7d63aef8d905c4deb98b4bbf7ce903c9e4
Author: Ivan Efremov <iefremov at unipro.ru>
Date:   Thu Nov 15 11:19:14 2012 +0700

    Update to 1.11.3

 .gitignore |    1 +
 sources    |    1 +
 ugene.spec |   78 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 3 files changed, 80 insertions(+), 0 deletions(-)
---
diff --git a/.gitignore b/.gitignore
index 37f5089..2659e93 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,3 +5,4 @@ ugene-1.7.0.tar.gz
 /ugene-1.9.3.tar.gz
 /ugene-1.9.4.tar.gz
 /ugene-1.9.8.tar.gz
+/ugene-1.11.3.tar.gz
diff --git a/sources b/sources
new file mode 100644
index 0000000..230e319
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+de40dd5a9c21cc92a85069fe35da49c1  ugene-1.11.3.tar.gz
diff --git a/ugene.spec b/ugene.spec
new file mode 100644
index 0000000..2aae69f
--- /dev/null
+++ b/ugene.spec
@@ -0,0 +1,78 @@
+Name:    ugene
+Summary: Integrated bioinformatics toolkit
+Version: 1.11.3
+Release: 1%{?dist}
+#The entire source code is GPLv2+ except:
+#file src/libs_3rdparty/qtbindings_core/src/qtscriptconcurrent.h which is GPLv2
+#files in src/plugins_3rdparty/script_debuger/src/qtscriptdebug/ which are GPLv2
+License: GPLv2+ and GPLv2
+Group:   Applications/Engineering
+URL:     http://ugene.unipro.ru
+Source0: http://ugene.unipro.ru/downloads/%{name}-%{version}.tar.gz
+
+BuildRequires: qt-devel >= 4.7.0 qt-webkit-devel >= 4.7.0 zlib-devel desktop-file-utils
+#We need strict versions of qt for correct work of src/libs_3rdparty/qtbindings_*
+Requires:  qt >= 4.7.0 qt-x11 >= 4.7.0 qtwebkit >= 4.7.0
+Provides: bundled(sqlite)
+Provides: bundled(samtools)
+
+%description
+Unipro UGENE is a cross-platform visual environment for DNA and protein
+sequence analysis. UGENE integrates the most important bioinformatics
+computational algorithms and provides an easy-to-use GUI for performing
+complex analysis of the genomic data. One of the main features of UGENE
+is a designer for custom bioinformatics workflows.
+
+%prep
+%setup -q
+
+%build
+%_bindir/qmake-qt4 -r \
+        INSTALL_BINDIR=%{_bindir} \
+        INSTALL_LIBDIR=%{_libdir} \
+        INSTALL_DATADIR=%{_datadir} \
+        INSTALL_MANDIR=%{_mandir} \
+        UGENE_EXCLUDE_LIST_ENABLED=1
+make %{?_smp_mflags}
+
+%install
+make install INSTALL_ROOT=%{buildroot}
+desktop-file-validate %{buildroot}/%{_datadir}/applications/%{name}.desktop
+
+%files
+%{_bindir}/*
+%{_libdir}/%{name}/
+%{_datadir}/applications/*
+%{_datadir}/pixmaps/*
+%{_datadir}/%{name}/
+%{_mandir}/man1/*
+%doc COPYRIGHT LICENSE LICENSE.3rd_party 
+
+%changelog
+* Thu Nov 2 2012 Yulia Algaer <yalgaer at unipro.ru> - 1.11.3-1 
+- Upstream version change
+
+* Mon Oct 3 2012 Yulia Algaer <yalgaer at unipro.ru> - 1.11.2-1 
+- Upstream version change
+
+* Mon Sep 21 2009 Ivan Efremov <iefremov at unipro.ru> - 1.5.2-1 
+- Upstream version change
+
+* Fri Jul 17 2009 Ivan Efremov <iefremov at unipro.ru> - 1.5.1-1 
+- Upstream version change
+- Fix for lrelease removed due to upstream package changes
+
+* Mon Jul 06 2009 Ivan Efremov <iefremov at unipro.ru> - 1.5.0-1
+- Upstream version change
+- Needed Qt versions bumped up
+- Fix for lrelease updated due to upstream package changes
+- desktop-file-utils added to dependencies
+
+* Tue Mar 24 2009 Ivan Efremov <iefremov at unipro.ru> - 1.4.1-1
+- Upstream version change
+
+* Fri Mar 06 2009 Ivan Efremov <iefremov at unipro.ru> - 1.4.0-1
+- Upstream version change
+
+* Mon Feb 02 2009 Ivan Efremov <iefremov at unipro.ru> - 1.3.3-1
+- Initial release of rpm