[InsightToolkit] Initial import (#539387)
mrceresa
mrceresa at fedoraproject.org
Tue Apr 23 15:14:55 UTC 2013
commit 3d0ec26194b1ea3448332823e131998c979a7d51
Author: Mario Ceresa <mrceresa at gmail.com>
Date: Tue Apr 23 17:14:38 2013 +0200
Initial import (#539387)
.gitignore | 2 +
...t-lib-lib64-according-to-the-architecture.patch | 26 ++
InsightToolkit-0004-Fix_System_TIFF_Build.patch | 27 ++
InsightToolkit.spec | 273 ++++++++++++++++++++
sources | 2 +
5 files changed, 330 insertions(+), 0 deletions(-)
---
diff --git a/.gitignore b/.gitignore
index e69de29..d9636e0 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1,2 @@
+/InsightToolkit-4.3.1.tar.gz
+/ItkSoftwareGuide-2.4.0.pdf
diff --git a/InsightToolkit-0001-Set-lib-lib64-according-to-the-architecture.patch b/InsightToolkit-0001-Set-lib-lib64-according-to-the-architecture.patch
new file mode 100644
index 0000000..dc2303a
--- /dev/null
+++ b/InsightToolkit-0001-Set-lib-lib64-according-to-the-architecture.patch
@@ -0,0 +1,26 @@
+From 295da373736f7401667617406ccaca993bf3593e Mon Sep 17 00:00:00 2001
+From: Mario Ceresa <mrceresa at gmail.com>
+Date: Sat, 24 Nov 2012 14:37:00 +0100
+Subject: [PATCH 1/2] Set lib/lib64 according to the architecture
+
+Signed-off-by: Mario Ceresa <mrceresa at gmail.com>
+---
+ CMakeLists.txt | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 81e8c09..e7076a2 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -66,7 +66,7 @@ if(NOT ITK_INSTALL_DOC_DIR)
+ set(ITK_INSTALL_DOC_DIR share/doc/ITK-${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR})
+ endif()
+ if(NOT ITK_INSTALL_PACKAGE_DIR)
+- set(ITK_INSTALL_PACKAGE_DIR "lib/cmake/ITK-${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}")
++ set(ITK_INSTALL_PACKAGE_DIR "lib${LIB_SUFFIX}/cmake/ITK-${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}")
+ endif()
+
+ # Override CMake's built-in add_* commands: assign LABELS to tests and targets
+--
+1.8.1
+
diff --git a/InsightToolkit-0004-Fix_System_TIFF_Build.patch b/InsightToolkit-0004-Fix_System_TIFF_Build.patch
new file mode 100644
index 0000000..4593024
--- /dev/null
+++ b/InsightToolkit-0004-Fix_System_TIFF_Build.patch
@@ -0,0 +1,27 @@
+Index: Modules/Compatibility/Deprecated/test/itkTestDriverIncludeDeprecatedIOFactories.h
+===================================================================
+diff -u -N -rd6ff008964bfea9f609e99354e76e96d2d426337 -rd11b737c52b7e98185585c530bcb2705a18bd578
+--- Modules/Compatibility/Deprecated/test/itkTestDriverIncludeDeprecatedIOFactories.h (.../itkTestDriverIncludeDeprecatedIOFactories.h) (revision d6ff008964bfea9f609e99354e76e96d2d426337)
++++ Modules/Compatibility/Deprecated/test/itkTestDriverIncludeDeprecatedIOFactories.h (.../itkTestDriverIncludeDeprecatedIOFactories.h) (revision d11b737c52b7e98185585c530bcb2705a18bd578)
+@@ -23,7 +23,10 @@
+ #include "itkNiftiImageIOFactory.h"
+ #include "itkGiplImageIOFactory.h"
+ #include "itkJPEGImageIOFactory.h"
+-#include "itkLSMImageIOFactory.h"
++#include "itk_tiff.h" // ITK_USE_SYSTEM_TIFF
++#ifndef ITK_USE_SYSTEM_TIFF
++# include "itkLSMImageIOFactory.h"
++#endif // ITK_USE_SYSTEM_TIFF
+ #include "itkMetaImageIOFactory.h"
+ #include "itkPNGImageIOFactory.h"
+ #include "itkNrrdImageIOFactory.h"
+@@ -43,7 +46,9 @@
+ itk::ObjectFactoryBase::RegisterFactory( itk::PNGImageIOFactory::New() );
+ itk::ObjectFactoryBase::RegisterFactory( itk::VTKImageIOFactory::New() );
+ itk::ObjectFactoryBase::RegisterFactory( itk::GiplImageIOFactory::New() );
++#ifndef ITK_USE_SYSTEM_TIFF
+ itk::ObjectFactoryBase::RegisterFactory( itk::LSMImageIOFactory::New() );
++#endif // ITK_USE_SYSTEM_TIFF
+ itk::ObjectFactoryBase::RegisterFactory( itk::NiftiImageIOFactory::New() );
+ itk::ObjectFactoryBase::RegisterFactory( itk::JPEGImageIOFactory::New() );
+ itk::ObjectFactoryBase::RegisterFactory( itk::TIFFImageIOFactory::New() );
diff --git a/InsightToolkit.spec b/InsightToolkit.spec
new file mode 100644
index 0000000..60b38e6
--- /dev/null
+++ b/InsightToolkit.spec
@@ -0,0 +1,273 @@
+%define _ver_major 4
+%define _ver_minor 3
+%define _ver_release 1
+
+%if 0%{?rhel} && 0%{?rhel} <= 5
+%{!?python_sitelib: %global python_sitelib %(%{__python} -c "from distutils.sysconfig import get_python_lib; print(get_python_lib())")}
+%{!?python_sitearch: %global python_sitearch %(%{__python} -c "from distutils.sysconfig import get_python_lib; print(get_python_lib(1))")}
+%endif
+
+Name: InsightToolkit
+Summary: Insight Toolkit library for medical image processing
+Version: %{_ver_major}.%{_ver_minor}.%{_ver_release}
+Release: 9%{?dist}
+License: ASL 2.0
+Group: Applications/Engineering
+Source0: http://sourceforge.net/projects/itk/files/itk/%{_ver_major}.%{_ver_minor}/%{name}-%{version}.tar.gz
+Source1: http://downloads.sourceforge.net/project/itk/itk/2.4/ItkSoftwareGuide-2.4.0.pdf
+URL: http://www.itk.org/
+Patch0: %{name}-0001-Set-lib-lib64-according-to-the-architecture.patch
+Patch1: %{name}-0004-Fix_System_TIFF_Build.patch
+
+BuildRequires: cmake
+BuildRequires: doxygen
+BuildRequires: fftw-devel
+BuildRequires: gdcm-devel
+BuildRequires: gccxml
+BuildRequires: hdf5-devel
+BuildRequires: libjpeg-devel
+BuildRequires: libxml2-devel
+BuildRequires: libpng-devel
+BuildRequires: libtiff-devel
+BuildRequires: libjpeg-devel
+BuildRequires: graphviz
+BuildRequires: python2-devel
+BuildRequires: vxl-devel
+BuildRequires: zlib-devel
+
+
+%description
+
+ITK is an open-source software toolkit for performing registration and
+segmentation. Segmentation is the process of identifying and classifying data
+found in a digitally sampled representation. Typically the sampled
+representation is an image acquired from such medical instrumentation as CT or
+MRI scanners. Registration is the task of aligning or developing
+correspondences between data. For example, in the medical environment, a CT
+scan may be aligned with a MRI scan in order to combine the information
+contained in both.
+
+ITK is implemented in C++ and its implementation style is referred to as
+generic programming (i.e.,using templated code). Such C++ templating means
+that the code is highly efficient, and that many software problems are
+discovered at compile-time, rather than at run-time during program execution.
+
+%package devel
+Summary: Insight Toolkit
+Group: Development/Libraries
+Requires: %{name}%{?_isa} = %{version}-%{release}
+
+%description devel
+
+%{summary}.
+Install this if you want to develop applications that use ITK.
+
+%package examples
+Summary: C++, Tcl and Python example programs/scripts for ITK
+Group: Development/Languages
+Requires: %{name}%{?_isa} = %{version}-%{release}
+
+%description examples
+ITK examples
+
+%package doc
+Summary: Documentation for ITK
+Group: Documentation
+BuildArch: noarch
+
+%description doc
+%{summary}.
+This package contains additional documentation.
+
+# Hit bug http://www.gccxml.org/Bug/view.php?id=13372
+# We agreed with Mattias Ellert to postpone the bindings till
+# next gccxml update.
+#%package python
+#Summary: Documentation for ITK
+#Group: Documentation
+#BuildArch: noarch
+
+#%description python
+#%{summary}.
+#This package contains python bindings for ITK.
+
+
+
+%prep
+%setup -q
+
+%patch0 -p1
+%patch1 -p0
+
+# copy guide into the appropriate directory
+cp -a %{SOURCE1} .
+
+# remove applications: they are shipped separately now
+rm -rf Applications/
+
+%build
+
+mkdir -p %{_target_platform}
+pushd %{_target_platform}
+
+%cmake .. \
+ -DBUILD_SHARED_LIBS:BOOL=ON \
+ -DBUILD_EXAMPLES:BOOL=ON \
+ -DCMAKE_BUILD_TYPE:STRING="RelWithDebInfo"\
+ -DCMAKE_VERBOSE_MAKEFILE=ON\
+ -DBUILD_TESTING=ON\
+ -DITKV3_COMPATIBILITY:BOOL=ON \
+ -DITK_BUILD_ALL_MODULES:BOOL=ON \
+ -DITK_WRAP_PYTHON:BOOL=OFF \
+ -DITK_WRAP_JAVA:BOOL=OFF \
+ -DBUILD_DOCUMENTATION:BOOL=OFF \
+ -DITK_USE_REVIEW:BOOL=ON \
+ -DITK_USE_SYSTEM_HDF5=ON \
+ -DITK_USE_SYSTEM_JPEG=ON \
+ -DITK_USE_SYSTEM_TIFF=ON \
+ -DITK_USE_SYSTEM_PNG=ON \
+ -DITK_USE_SYSTEM_ZLIB=ON \
+ -DITK_USE_SYSTEM_GDCM=ON \
+ -DITK_USE_SYSTEM_VXL=ON \
+ -DITK_USE_SYSTEM_SWIG=ON \
+ -DITK_USE_SYSTEM_GCCXML=ON \
+ -DITK_INSTALL_LIBRARY_DIR=%{_lib}/%{name} \
+ -DITK_INSTALL_INCLUDE_DIR=include/%{name} \
+ -DITK_INSTALL_PACKAGE_DIR=%{_lib}/cmake/%{name}/ \
+ -DITK_INSTALL_RUNTIME_DIR:PATH=%{_bindir} \
+ -DCMAKE_CXX_FLAGS:STRING="-fpermissive"
+
+popd
+
+make %{?_smp_mflags} -C %{_target_platform}
+
+%install
+%make_install -C %{_target_platform}
+
+# Install examples
+mkdir -p %{buildroot}%{_datadir}/%{name}/examples
+cp -ar Examples/* %{buildroot}%{_datadir}/%{name}/examples/
+
+# Install ldd config file
+mkdir -p %{buildroot}%{_sysconfdir}/ld.so.conf.d/
+echo %{_libdir}/%{name} > %{buildroot}%{_sysconfdir}/ld.so.conf.d/%{name}.conf
+
+%check
+# There are a couple of tests randomly failing on f19 and rawhide and I'm debugging
+# it with upstream. Making the tests informative for now
+make test -C %{_target_platform} || exit 0
+
+%post -p /sbin/ldconfig
+
+%postun -p /sbin/ldconfig
+
+%files
+%dir %{_datadir}/%{name}
+%dir %{_libdir}/%{name}
+#In order to recognize /usr/lib64/InsightToolkit we need to ship a proper file for /etc/ld.so.conf.d/
+%config(noreplace) %{_sysconfdir}/ld.so.conf.d/%{name}.conf
+%{_libdir}/%{name}/*.so.*
+%doc LICENSE README.txt NOTICE
+
+
+%files devel
+%{_libdir}/%{name}/*.so
+%{_libdir}/cmake/%{name}/
+%{_includedir}/%{name}/
+
+
+%files examples
+%{_datadir}/%{name}/examples
+%{_bindir}/*
+
+%files doc
+%defattr(-,root,root,-)
+%{_docdir}/%{name}-%{version}/
+%{_docdir}/ITK-%{_ver_major}.%{_ver_minor}/
+%doc ItkSoftwareGuide-2.4.0.pdf
+
+
+%changelog
+* Tue Apr 23 2013 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.3.1-9
+- Changed license to ASL 2.0
+
+* Mon Apr 22 2013 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.3.1-8
+- Build examples
+- Making tests informative as we debug it with upstream
+- Fixed cmake support file location
+- Disabled python bindings for now, hit http://www.gccxml.org/Bug/view.php?id=13372
+
+* Sat Apr 20 2013 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.3.1-7
+- Enabled v3.20 compatibility layer
+
+* Thu Apr 18 2013 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.3.1-6
+- Removed unused patches
+
+* Mon Apr 08 2013 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.3.1-5
+- Fixed failing tests
+
+* Wed Apr 03 2013 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.3.1-4
+- Fixed build with USE_SYSTEM_TIFF
+
+* Fri Mar 29 2013 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.3.1-3
+- Compiles against VXL with compatibility patches
+- Enabled testing
+
+* Tue Feb 12 2013 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.3.1-2
+- Reorganized sections
+- Fixed patch naming
+- Removed buildroot and rm in install section
+- Removed cmake version constraint
+- Changed BR libjpeg-turbo-devel to libjpeg-devel
+- Preserve timestamp of SOURCE1 file.
+- Fixed main file section
+- Added noreplace
+
+* Fri Jan 25 2013 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.3.1-1
+- Updated to 4.3.1
+- Fixed conflicts with previous patches
+- Dropped gcc from BR
+- Fixed tabs-vs-space
+- Improved description
+- Re-enabled system tiff
+- Clean up the spec
+- Sanitize use of dir macro
+- Re-organized docs
+- Fixed libdir and datadir ownership
+
+* Wed Dec 12 2012 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.2.1-4
+- Included improvements to the spec file from Dan Vratil
+
+* Tue Dec 4 2012 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.2.1-3
+- Build against system VXL
+
+* Mon Nov 26 2012 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.2.1-2
+- Reorganized install paths
+
+* Tue Nov 20 2012 Mario Ceresa mrceresa fedoraproject org InsightToolkit 4.2.1-1
+- Updated to new version
+
+* Wed Nov 30 2011 Mario Ceresa mrceresa fedoraproject org InsightToolkit 3.20.1-1
+- Updated to new version
+- Added binary morphology code
+
+* Fri May 27 2011 Mario Ceresa mrceresa fedoraproject org InsightToolkit 3.20.0-5
+- Added cstddef patch for gcc 4.6
+
+* Mon Jan 24 2011 Mario Ceresa mrceresa at gmail.com InsightToolkit 3.20.0-4
+- Added the ld.so.conf file
+
+* Mon Nov 22 2010 Mario Ceresa mrceresa at gmail.com InsightToolkit 3.20.0-3
+- Updated to 3.20 release
+- Added vxl utility and review material
+- Applied patch from upstream to fix vtk detection (Thanks to Mathieu Malaterre)
+- Added patch to install in the proper lib dir based on arch value
+- Added patch to set datadir as cmake configuration files dir
+
+* Sun Dec 6 2009 Mario Ceresa mrceresa at gmail.com InsightToolkit 3.16.0-2
+- Fixed comments from revision: https://bugzilla.redhat.com/show_bug.cgi?id=539387#c8
+
+* Tue Nov 17 2009 Mario Ceresa mrceresa at gmail.com InsightToolkit 3.16.0-1
+- Initial RPM Release
+
+
diff --git a/sources b/sources
index e69de29..73c0fe9 100644
--- a/sources
+++ b/sources
@@ -0,0 +1,2 @@
+de443086f1f5dd27c3639644cebe488c InsightToolkit-4.3.1.tar.gz
+27c09e9c238c723a60a6d7a127ae657d ItkSoftwareGuide-2.4.0.pdf
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