[eigen3/f19] Add upstream patch to fix malloc/free bugs (rhbz#978971)

[rmattes]

commit 8e1a5e42c3b6f94874a64d51b98bf2d7c5891bb4
Author: Rich Mattes <richmattes at gmail.com>
Date:   Sat Jun 29 13:23:33 2013 -0400

    Add upstream patch to fix malloc/free bugs (rhbz#978971)

 eigen3-3.1.3-memalign.patch |   41 +++++++++++++++++++++++++++++++++++++++++
 eigen3.spec                 |   10 +++++++++-
 2 files changed, 50 insertions(+), 1 deletions(-)
---
diff --git a/eigen3-3.1.3-memalign.patch b/eigen3-3.1.3-memalign.patch
new file mode 100644
index 0000000..5c87abb
--- /dev/null
+++ b/eigen3-3.1.3-memalign.patch
@@ -0,0 +1,41 @@
+# HG changeset patch
+# User Gael Guennebaud <g.gael at free.fr>
+# Date 1372279754 -7200
+# Node ID 21273ebd6b4d9137d29663c0ece1b683db7d3cc1
+# Parent  a72dae9e2650eac6f9b5be1c4e506560f8e2eb17
+Fix bug 554: include unistd.h before checking the presence of posix_memalign.
+
+diff --git a/Eigen/src/Core/util/Memory.h b/Eigen/src/Core/util/Memory.h
+--- a/Eigen/src/Core/util/Memory.h
++++ b/Eigen/src/Core/util/Memory.h
+@@ -53,9 +53,16 @@
+ #endif
+ 
+-#if ((defined __QNXNTO__) || (defined _GNU_SOURCE) || ((defined _XOPEN_SOURCE) && (_XOPEN_SOURCE >= 600))) \
+- && (defined _POSIX_ADVISORY_INFO) && (_POSIX_ADVISORY_INFO > 0)
+-  #define EIGEN_HAS_POSIX_MEMALIGN 1
+-#else
++// See bug 554 (http://eigen.tuxfamily.org/bz/show_bug.cgi?id=554)
++// It seems to be unsafe to check _POSIX_ADVISORY_INFO without including unistd.h first.
++// Currently, let's include it only on unix systems:
++#if defined(__unix__) || defined(__unix)
++  #include <unistd.h>
++  #if ((defined __QNXNTO__) || (defined _GNU_SOURCE) || ((defined _XOPEN_SOURCE) && (_XOPEN_SOURCE >= 600))) && (defined _POSIX_ADVISORY_INFO) && (_POSIX_ADVISORY_INFO > 0)
++    #define EIGEN_HAS_POSIX_MEMALIGN 1
++  #endif
++#endif
++
++#ifndef EIGEN_HAS_POSIX_MEMALIGN
+   #define EIGEN_HAS_POSIX_MEMALIGN 0
+ #endif
+ 
+@@ -209,7 +216,7 @@
+     if(posix_memalign(&result, 16, size)) result = 0;
+   #elif EIGEN_HAS_MM_MALLOC
+     result = _mm_malloc(size, 16);
+-#elif defined(_MSC_VER) && (!defined(_WIN32_WCE))
++  #elif defined(_MSC_VER) && (!defined(_WIN32_WCE))
+     result = _aligned_malloc(size, 16);
+   #else
+     result = handmade_aligned_malloc(size);
+
diff --git a/eigen3.spec b/eigen3.spec
index a19fa38..5e119d7 100644
--- a/eigen3.spec
+++ b/eigen3.spec
@@ -1,6 +1,6 @@
 Name:           eigen3
 Version:        3.1.3
-Release:        1%{?dist}
+Release:        2%{?dist}
 Summary:        A lightweight C++ template library for vector and matrix math
 
 Group:          Development/Libraries
@@ -10,6 +10,10 @@ URL:            http://eigen.tuxfamily.org/index.php?title=Main_Page
 # Renamed source file so it's not just a version number
 Source0:        eigen-%{version}.tar.bz2
 Patch0:         eigen3_unused-typedefs.patch
+# Fix for Upstream bug 554: http://eigen.tuxfamily.org/bz/show_bug.cgi?id=554 
+# Derived from hg changeset https://bitbucket.org/eigen/eigen/commits/21273ebd6b4d/
+# Should fix rhbz 978971
+Patch1:         eigen3-3.1.3-memalign.patch
 BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 BuildArch:      noarch
 
@@ -43,6 +47,7 @@ Provides: %{name}-static = %{version}-%{release}
 %prep
 %setup -q -n eigen-eigen-2249f9c22fe8
 %patch0 -p1
+%patch1 -p1
 
 %build
 mkdir %{_target_platform}
@@ -70,6 +75,9 @@ rm -rf %{buildroot}
 %{_datadir}/pkgconfig/*
 
 %changelog
+* Sat Jun 29 2013 Rich Mattes <richmattes at gmail.com> - 3.1.3-2
+- Add upstream patch to fix malloc/free bugs (rhbz#978971)
+
 * Fri Apr 19 2013 Sandro Mani <manisandro at gmail.com> - 3.1.3-1
 - Update to release 3.1.3
 - Add patch for unused typedefs warning with gcc4.8