[refmac-dictionary] * Mon Jul 8 2013 Tim Fenn <tim.fenn at gmail.com> - 5.41-1 - update to 5.41 - update upstream URL

[Timothy Fenn]

commit cad4a24dc42814d9470270033d90905e0aca4871
Author: Tim Fenn <tim.fenn at gmail.com>
Date:   Tue Jul 23 23:57:42 2013 -0700

    * Mon Jul 8 2013 Tim Fenn <tim.fenn at gmail.com> - 5.41-1
    - update to 5.41
    - update upstream URL

 .gitignore             |    1 +
 refmac-dictionary.spec |   30 ++++++++++++++++++++++--------
 sources                |    2 +-
 3 files changed, 24 insertions(+), 9 deletions(-)
---
diff --git a/.gitignore b/.gitignore
index 405dc9e..c0dcd77 100644
--- a/.gitignore
+++ b/.gitignore
@@ -4,3 +4,4 @@ refmac_dictionary_v5.21.tar.gz
 /refmac_dictionary_v5.28.tar.gz
 /refmac_dictionary_v5.30.tar.gz
 /refmac_dictionary_v5.38.tar.gz
+/refmac_dictionary_v5.41.tar.gz
diff --git a/refmac-dictionary.spec b/refmac-dictionary.spec
index 675acbf..5c75ad3 100644
--- a/refmac-dictionary.spec
+++ b/refmac-dictionary.spec
@@ -1,11 +1,11 @@
 Name: refmac-dictionary
 Summary: Refmac ligand dictionaries
-Version: 5.38
-Release: 2%{?dist}
+Version: 5.41
+Release: 1%{?dist}
 License: LGPLv2+
 Group: System Environment/Libraries
-URL: http://www.ysbl.york.ac.uk/~garib/refmac/latest_refmac.html
-Source0: http://www.ysbl.york.ac.uk/refmac/data/refmac_experimental/refmac_dictionary_v%{version}.tar.gz
+URL: http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/refmac.html
+Source0: http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/refmac_dictionary_v%{version}.tar.gz
 BuildArch: noarch
 
 %description
@@ -18,12 +18,23 @@ validation tools.
 
 %prep
 %setup -q -c
+# stuff we don't want to redistribute/need
 rm monomers/pdb_v2to3.py
 rm monomers/pdb_alt_names.txt
 rm monomers/dnarna_basepairs.txt
 rm monomers/dnarna_basepairs_2.txt
-rm monomers/\#pdb_v2to3.py\#
-rm monomers/\.DS_Store
+rm -rf monomers/.bzr
+rm monomers/t/TRP.cif~ monomers/g/GLU.cif~ monomers/h/HIS.cif~ monomers/g/GLN.cif~
+
+# clear exec flag
+chmod 644 monomers/docs/bug_fixes.html
+chmod 644 monomers/primes.table monomers/primes.txt monomers/m/MO6.cif
+chmod 644 monomers/f/FUC-A-L.cif
+chmod 644 monomers/n/NAG-B-D.cif
+chmod 644 monomers/m/MAN-B-D.cif
+chmod 644 monomers/g/GLC-B-D.cif
+chmod 644 monomers/d/DUM.cif
+chmod 644 monomers/g/GAL-B-D.cif
 
 %build
 
@@ -37,11 +48,14 @@ cp -pr monomers %{buildroot}%{_datadir}/%{name}-%{version}/data
 rm -rf %{buildroot}
 
 %files
-%defattr(-,root,root,-)
-%doc monomers/COPYING
+%doc monomers/COPYING monomers/docs/bug_fixes.html
 %{_datadir}/%{name}-%{version}
 
 %changelog
+* Mon Jul 8 2013 Tim Fenn <tim.fenn at gmail.com> - 5.41-1
+- update to 5.41
+- update upstream URL
+
 * Thu Feb 14 2013 Fedora Release Engineering <rel-eng at lists.fedoraproject.org> - 5.38-2
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
 
diff --git a/sources b/sources
index b20883b..b1c4498 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-174a5fc5e5be03cb432c61e8da4283df  refmac_dictionary_v5.38.tar.gz
+e7acb760fcbbe663147f5245b6c523c4  refmac_dictionary_v5.41.tar.gz