[jmol] Update to 14.0.3.

[Susi Lehtola]

commit 8f8f505a9b671f32938c2244ee5b6db5ef1d960e
Author: Susi Lehtola <jussilehtola at fedoraproject.org>
Date:   Wed Jan 1 23:27:02 2014 +0200

    Update to 14.0.3.

 jmol-14.0.3-dontsign.patch    |   64 ++++++++++++++++++++++++++++++++++++++
 jmol-14.0.3-fedorabuild.patch |   69 +++++++++++++++++++++++++++++++++++++++++
 2 files changed, 133 insertions(+), 0 deletions(-)
---
diff --git a/jmol-14.0.3-dontsign.patch b/jmol-14.0.3-dontsign.patch
new file mode 100644
index 0000000..cd1a88b
--- /dev/null
+++ b/jmol-14.0.3-dontsign.patch
@@ -0,0 +1,64 @@
+diff -up jmol-14.0.3/build.xml.nosign jmol-14.0.3/build.xml
+--- jmol-14.0.3/build.xml.nosign	2014-01-01 23:14:09.418488188 +0200
++++ jmol-14.0.3/build.xml	2014-01-01 23:18:35.610407535 +0200
+@@ -153,7 +153,7 @@ Bob Hanson hansonr at stolaf.edu 11/26/2013
+     </fileset>
+   </path>
+ 
+-  <target name="main" id="main" depends="init,jar,applet-jar,signed-applet,smiles-applet-jar"/>
++  <target name="main" id="main" depends="init,jar,applet-jar,smiles-applet-jar"/>
+   
+   <target name="all" id="all" depends="doc,main"/>
+ 
+@@ -517,10 +517,10 @@ all support for previous versions remove
+       <fileset dir="${appjars.dir}" includes="**/*"/>
+       <fileset dir="src/org/jmol/translation/Jmol" includes="Messages*.class"/>
+     </jar>
+-    <antcall target="sign-jar-file">
++    <!--<antcall target="sign-jar-file">
+       <param name="sign-jar-file-dir" value="build" />
+       <param name="sign-jar-file-name"  value="Jmol.jar" />
+-    </antcall>
++    </antcall>-->
+   	
+     <jar destfile="build/JmolData.jar"
+          manifest="manifest/applicationData.txt">
+@@ -551,10 +551,10 @@ all support for previous versions remove
+       <fileset dir="${appjars.dir}" includes="**/cli/** **/naga/**" />
+       <fileset dir="src/org/jmol/translation/Jmol" includes="Messages*.class"/>
+     </jar>
+-    <antcall target="sign-jar-file">
++    <!--<antcall target="sign-jar-file">
+       <param name="sign-jar-file-dir" value="build" />
+       <param name="sign-jar-file-name"  value="JmolData.jar" />
+-    </antcall>
++    </antcall>-->
+ 
+     <copy todir="build">
+       <fileset dir=".">
+@@ -583,10 +583,10 @@ all support for previous versions remove
+       </fileset>
+       <fileset dir="${appjars.dir}" includes="**/*"/>
+     </jar>
+-    <antcall target="sign-jar-file">
++    <!--<antcall target="sign-jar-file">
+       <param name="sign-jar-file-dir" value="build" />
+       <param name="sign-jar-file-name"  value="Jvxl.jar" />
+-    </antcall>
++    </antcall>-->
+   	<!--
+     <jar destfile="ChimeToJmol.jar"
+          manifest="manifest/chimetojmol.txt">
+@@ -1151,10 +1151,10 @@ all support for previous versions remove
+       </indexjars>
+     </jar>
+   	<echo> signing JmolApplet*.jar</echo>
+-    <antcall target="sign-jar-file">
++    <!--<antcall target="sign-jar-file">
+       <param name="sign-jar-file-dir" value="build" />
+       <param name="sign-jar-file-name"  value="JmolApplet*.jar" />
+-    </antcall>
++    </antcall>-->
+ 
+   </target>
+ 
diff --git a/jmol-14.0.3-fedorabuild.patch b/jmol-14.0.3-fedorabuild.patch
new file mode 100644
index 0000000..23dff3f
--- /dev/null
+++ b/jmol-14.0.3-fedorabuild.patch
@@ -0,0 +1,69 @@
+diff -up jmol-14.0.3/build.xml.fedorabuild jmol-14.0.3/build.xml
+--- jmol-14.0.3/build.xml.fedorabuild	2013-12-30 03:27:17.000000000 +0200
++++ jmol-14.0.3/build.xml	2014-01-01 23:13:51.023979589 +0200
+@@ -62,7 +62,7 @@ Bob Hanson hansonr at stolaf.edu 11/26/2013
+   <!-- pull developer-specific settings from their home directory -->
+   <property file="${user.home}/.jmol.build.properties" />
+   <!-- compile options -->
+-  <property name="build.sysclasspath" value="ignore" />
++  <property name="build.sysclasspath" value="last" />
+   <property name="build.compiler" value="javac1.6" />
+   <!-- for some reason, I can't get ant to use this ${java.version}
+        property as the value of the source parameter -->
+@@ -95,13 +95,13 @@ Bob Hanson hansonr at stolaf.edu 11/26/2013
+   <echo message="version=${version}" />
+   <property name="jvxl_version" value="0.1" />
+ 
+-  <input message="private property file:" addproperty="Private.propertyFile" defaultValue="none" />
++  <!--<input message="private property file:" addproperty="Private.propertyFile" defaultValue="none" />-->
+   <if><available file="${Private.propertyFile}" /><then>
+   	<property file="${Private.propertyFile}" />
+ 	<echo>using ${Private.keystore} ${Private.storetype}</echo>
+   </then></if>
+   <property name="tests.source.dir" value="source-tests" />
+-  <property name="lib.dir" value="jars" />
++  <property name="lib.dir" value="/usr/share/java" />
+   <property name="plugin.dir" value="plugin-jars" />
+   <property name="appjars.dir" value="build/appjars" />
+   <property name="classes.dir" value="build/classes" />
+@@ -113,8 +113,8 @@ Bob Hanson hansonr at stolaf.edu 11/26/2013
+   <property name="jmol.applet.web.dir" value="appletweb" />
+   <property name="docbook-xsl" value="docbook-xsl-1.76.1" />
+   <property name="docbook-xml" value="docbook-xml-4.4" />
+-  <property name="naga.jar" value="naga-3_0.jar" />
+-  <property name="commons-cli.jar" value="commons-cli-1.0.jar" />
++  <property name="naga.jar" value="naga.jar" />
++  <property name="commons-cli.jar" value="commons-cli.jar" />
+   <property name="saxon.jar" value="saxon.jar" />
+   <property name="saxon.main" value="com.icl.saxon.StyleSheet" />
+   <property name="selfsign.store" value="ca-cert/selfSignedCertificate/selfSignedCertificate.store" />
+@@ -438,7 +438,8 @@ all support for previous versions remove
+           <!-- srcfiles dir="${lib.dir}" includes="Acme.jar"/ -->
+           <!-- srcfiles dir="${lib.dir}" includes="${itext.jar}"/ -->
+           <srcfiles dir="${lib.dir}" includes="${commons-cli.jar}"/>
+-          <srcfiles dir="${lib.dir}" includes="JSpecView.jar"/>
++          <srcfiles dir="${lib.dir}" includes="jspecview.app.jar"/>
++          <srcfiles dir="${lib.dir}" includes="jspecview.applet.jar"/>
+         </uptodate>
+         <uptodate targetfile="build/libjars.timestamp"
+                   srcfile="${appjars.dir}"/>
+@@ -471,7 +472,8 @@ all support for previous versions remove
+     <!-- unjar dest="${appjars.dir}" src="${lib.dir}/Acme.jar"/ -->
+     <!-- unjar dest="${appjars.dir}" src="${lib.dir}/${itext.jar}"/ -->
+     <unjar dest="${appjars.dir}" src="${lib.dir}/${commons-cli.jar}"/>
+-    <unjar dest="${appjars.dir}" src="${lib.dir}/JSpecView.jar"/>
++    <unjar dest="${appjars.dir}" src="${lib.dir}/jspecview.app.jar"/>
++    <unjar dest="${appjars.dir}" src="${lib.dir}/jspecview.applet.jar"/>
+   	<delete dir="${appjars.dir}/javajs" />
+   	<delete dir="${appjars.dir}/org/jmol" />
+   	<delete dir="${appjars.dir}/META-INF" />
+@@ -1223,7 +1225,8 @@ all support for previous versions remove
+         <include name="JmolLib.jar" />
+       </fileset>
+       <fileset dir="jars">
+-        <include name="JSpecView.jar" />
++        <include name="jspecview.app.jar" />
++        <include name="jspecview.applet.jar" />
+       </fileset>
+       <fileset dir=".">
+         <include name="jmol" />