[Ray] update version with upstream version 2.3.1

[Sebastien Boisvert]

commit 98d9a918e1013df6c5b0c360f62e5377939c3b28
Author: Sébastien Boisvert <sebastien.boisvert.3 at ulaval.ca>
Date:   Mon Feb 24 12:53:18 2014 -0500

    update version with upstream version 2.3.1
    
    Signed-off-by: Sébastien Boisvert <sebastien.boisvert.3 at ulaval.ca>

 Ray.spec |   17 ++++++++---------
 1 files changed, 8 insertions(+), 9 deletions(-)
---
diff --git a/Ray.spec b/Ray.spec
index 372f545..4fde096 100644
--- a/Ray.spec
+++ b/Ray.spec
@@ -1,12 +1,12 @@
 Name:           Ray
-Version:        2.1.0
-Release:        8%{?dist}
+Version:        2.3.1
+Release:        1%{?dist}
 Summary:        Parallel genome assemblies for parallel DNA sequencing
 
 Group:          Applications/Engineering
 License:        GPLv3
 URL:            http://denovoassembler.sourceforge.net/
-Source0:        http://downloads.sourceforge.net/denovoassembler/%{name}-v%{version}.tar.bz2
+Source0:        http://downloads.sourceforge.net/denovoassembler/%{name}-%{version}.tar.bz2
 Patch0:         Ray.manpage.patch
 
 %global mpich 1
@@ -96,20 +96,18 @@ computers using the message-passing interface (MPI) standard.
 This sub-package contains scripts and XSL sheets for post-processing.
 
 %prep
-%setup -q -n %{name}-v%{version}
+%setup -q -n %{name}-%{version}
 %patch0
 
 %build
-CXXFLAGS="%{optflags} -D MAXKMERLENGTH=32 -D HAVE_LIBZ -D HAVE_LIBBZ2 -D "
-CXXFLAGS+="RAY_VERSION=\\\\\\\"2.1.0\\\\\\\" "
-CXXFLAGS+="-D RAYPLATFORM_VERSION=\\\\\\\"1.1.0\\\\\\\" -I . -I ../%{name}Platform"
+CXXFLAGS="%{optflags}"
 
 %{_openmpi_load}
 make CXXFLAGS="$CXXFLAGS" HAVE_LIBBZ2=y HAVE_LIBZ=y
 cp %{name} %{name}$MPI_SUFFIX
 
 cp README.md README
-cp %{name}Platform/README README.%{name}Platform
+cp %{name}Platform/README.md README.%{name}Platform
 cp %{name}Platform/AUTHORS AUTHORS.%{name}Platform
 
 make clean
@@ -181,8 +179,9 @@ rm -rf %{buildroot}
 %{_datadir}/%{name}/
 
 %changelog
-* Mon Feb 24 2014 Sébastien Boisvert <sebastien.boisvert.3 at ulaval.ca> - 2.1.0-9
+* Mon Feb 24 2014 Sébastien Boisvert <sebastien.boisvert.3 at ulaval.ca> - 2.3.1-1
 - Fix days of week in spec changelog (rpmlint warning)
+- Update version with upstream.
 
 * Wed Sep 04 2013 Sébastien Boisvert <sebastien.boisvert.3 at ulaval.ca> - 2.1.0-8
 - Change dependency name from mpich2 to mpich